RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 TMEM236Q5W0B7 351 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 ARL9Q6T311 187 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 NRMQ8IXM6 262 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 CDS1Q92903 461 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 LRRC3BQ96PB8 259 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 DEFB126Q9BYW3 111 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 HSPE1-MOB4S4R3N1 261 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 POLR1CO15160 346 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-202ENST00000377797 CD27P26842 260 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 PTGES3Q15185 160 aaKnown RBP13.68□□□□□ -0.22
TCOF1-202ENST00000377797 CCNJQ5T5M9 372 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 TLDC1Q6P9B6 456 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 OR51G2Q8NGK0 314 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 ISOC1Q96CN7 298 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 LRR1Q96L50 414 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 TEX101Q9BY14 249 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 SDHAF3Q9NRP4 125 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 RNF6Q9Y252 685 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 WBP4O75554 376 aaKnown RBP13.67□□□□□ -0.22
TCOF1-202ENST00000377797 RACK1P63244 317 aaKnown RBP13.67□□□□□ -0.22
TCOF1-202ENST00000377797 ACY1Q03154 408 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 CRYZQ08257 329 aaKnown RBP13.67□□□□□ -0.22
TCOF1-202ENST00000377797 ERV3-1Q14264 604 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 UGT2A3Q6UWM9 527 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 CREB3L4Q8TEY5 395 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 SLC38A5Q8WUX1 472 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 FAR1Q8WVX9 515 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 ABI3Q9P2A4 366 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 ERVK-19Q9WJR5 959 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 WDR37Q9Y2I8 494 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 AP1M2Q9Y6Q5 423 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 NPIPA5A0A0B4J1W7 369 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 NPIPA7E9PJI5 369 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 GAPDHSO14556 408 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-202ENST00000377797 ASNA1O43681 348 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 TLX3O43711 291 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-202ENST00000377797 NPIPA8P0DM63 369 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 ZNF182P17025 639 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-202ENST00000377797 HOXC5Q00444 222 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 NDUFAF6Q330K2 333 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 COX20Q5RI15 118 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 WDR20Q8TBZ3 569 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 DNAJA3Q96EY1 480 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 OR7D2Q96RA2 312 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 TMEM121BQ9BXQ6 578 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-202ENST00000377797 FOXQ1Q9C009 403 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 PCDHGB1Q9Y5G3 927 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 TRPM6Q9BX84 2022 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 A0A1B0GW55 424 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 DUX4L2P0CJ85 424 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 DUX4L3P0CJ86 424 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 DUX4L4P0CJ87 422 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 DUX4L5P0CJ88 424 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 DUX4L6P0CJ89 424 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 DUX4L7P0CJ90 424 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 CKMT1AP12532 417 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 GK3PQ14409 553 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 ALG10BQ5I7T1 473 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 XKR5Q6UX68 686 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 LAS2Q8IYD9 372 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 SDR16C5Q8N3Y7 309 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 FRMD1Q8N878 549 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 FAM46AQ96IP4 442 aaKnown RBP13.67□□□□□ -0.22
TCOF1-202ENST00000377797 LPAR4Q99677 370 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 GLIPR2Q9H4G4 154 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 KCMF1Q9P0J7 381 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 DUX4Q9UBX2 424 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 TRAPPC13A5PLN9 417 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 LRIT2A6NDA9 550 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 OSMP13725 252 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 HK1P19367 917 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 SDC2P34741 201 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 KLHL24Q6TFL4 600 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 TSEN15Q8WW01 171 aaKnown RBP13.67□□□□□ -0.22
TCOF1-202ENST00000377797 C16orf58Q96GQ5 468 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 IL20RAQ9UHF4 553 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 PCDHGA8Q9Y5G5 932 aa13.67□□□□□ -0.22
TCOF1-202ENST00000377797 ARID1BQ8NFD5 2236 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-202ENST00000377797 C17orf105B2RV13 164 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 CASC3O15234 703 aaKnown RBP13.66□□□□□ -0.22
TCOF1-202ENST00000377797 ETHE1O95571 254 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 GBX2P52951 348 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-202ENST00000377797 C19orf47Q8N9M1 422 aaKnown RBP13.66□□□□□ -0.22
TCOF1-202ENST00000377797 ZNF420Q8TAQ5 688 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-202ENST00000377797 ZNF675Q8TD23 568 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 SLC41A3Q96GZ6 507 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 ERMAPQ96PL5 475 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-202ENST00000377797 MAP3K3Q99759 626 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 PINK1Q9BXM7 581 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 ACOX3O15254 700 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 SYPP08247 313 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 ZNF26P17031 533 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-202ENST00000377797 AFF3P51826 1226 aaKnown RBP13.66□□□□□ -0.22
TCOF1-202ENST00000377797 TAB1Q15750 504 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 DDI2Q5TDH0 399 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 Q6ZS52 159 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 SFXN5Q8TD22 340 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 EFHD2Q96C19 240 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-202ENST00000377797 HS6ST2Q96MM7 605 aa13.66□□□□□ -0.22
TCOF1-202ENST00000377797 UNC119BA6NIH7 251 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms