RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 HCN1O60741 890 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 BCAS2O75934 225 aaPredicted RBP16.83■□□□□ 0.28
CLN3-202ENST00000355477 SNX4O95219 450 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 JUNP05412 331 aaKnown RBP16.83■□□□□ 0.28
CLN3-202ENST00000355477 LINC00032P0C843 101 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 CT45A8P0DMV1 189 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 CT45A9P0DMV2 189 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 ARRB2P32121 409 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 NUP214P35658 2090 aaPredicted RBP16.83■□□□□ 0.28
CLN3-202ENST00000355477 TRPC1P48995 793 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 CORO7P57737 925 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 DCAF7P61962 342 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 PMPCAQ10713 525 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 UGT3A2Q3SY77 523 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 CT45A2Q5DJT8 189 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 ARL13AQ5H913 290 aaPredicted RBP16.83■□□□□ 0.28
CLN3-202ENST00000355477 RTL6Q6ICC9 239 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 ZNF585AQ6P3V2 769 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 ZCCHC23Q6ZST2 131 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 NUP54Q7Z3B4 507 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 FAM9CQ8IZT9 166 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 MREGQ8N565 214 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 ERP27Q96DN0 273 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 METTL2AQ96IZ6 378 aaKnown RBP16.83■□□□□ 0.28
CLN3-202ENST00000355477 ZNF597Q96LX8 424 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 VSTM2LQ96N03 204 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 GNRHR2Q96P88 292 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 EXO5Q9H790 373 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 LRTM1Q9HBL6 345 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 MIEF1Q9NQG6 463 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 C1orf109Q9NX04 203 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 QPCTLQ9NXS2 382 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 TAS2R7Q9NYW3 318 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 ACAD8Q9UKU7 415 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 WBP11Q9Y2W2 641 aaKnown RBP16.83■□□□□ 0.28
CLN3-202ENST00000355477 TRAF6Q9Y4K3 522 aa16.83■□□□□ 0.28
CLN3-202ENST00000355477 C2orf72A6NCS6 295 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 FRG2CA6NGY1 282 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 RGS14O43566 566 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 TYROBPO43914 113 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 NPHS1O60500 1241 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 PLOD3O60568 738 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 UGT2B11O75310 529 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 FGF4P08620 206 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 ACVR2AP27037 513 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 GDF1P27539 372 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 PTGDSP41222 190 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 NCBP2P52298 156 aaKnown RBP eCLIP16.82■□□□□ 0.28
CLN3-202ENST00000355477 NUP107P57740 925 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 RPP38P78345 283 aaKnown RBP16.82■□□□□ 0.28
CLN3-202ENST00000355477 PLCXD2Q0VAA5 305 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 TMEM211Q6ICI0 200 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 NPSR1Q6W5P4 371 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 RNF165Q6ZSG1 346 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 PACS2Q86VP3 889 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 GFM2Q969S9 779 aaKnown RBP16.82■□□□□ 0.28
CLN3-202ENST00000355477 TMBIM1Q969X1 311 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 FCRL1Q96LA6 429 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 BTBD9Q96Q07 612 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 UBQLN3Q9H347 655 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 FOLH1BQ9HBA9 442 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 CHST11Q9NPF2 352 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 RNF6Q9Y252 685 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 FAM215AQ9Y5M1 114 aa16.82■□□□□ 0.28
CLN3-202ENST00000355477 ESPNB1AK53 854 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 ICOSLGO75144 302 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 ERN1O75460 977 aaKnown RBP16.81■□□□□ 0.28
CLN3-202ENST00000355477 SNRPB2P08579 225 aaKnown RBP16.81■□□□□ 0.28
CLN3-202ENST00000355477 KIR3DL1P43629 444 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 MASP1P48740 699 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 ZNF844Q08AG5 666 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 RFTN2Q52LD8 501 aaPredicted RBP16.81■□□□□ 0.28
CLN3-202ENST00000355477 IKBIPQ70UQ0 350 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 NEIL3Q8TAT5 605 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 CA5BP1Q8WTZ4 195 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 SARAFQ96BY9 339 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 AMDHD1Q96NU7 426 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 GLIPR2Q9H4G4 154 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 METTL7AQ9H8H3 244 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 COQ3Q9NZJ6 369 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 SENP1Q9P0U3 644 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 B4GALT7Q9UBV7 327 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 RAB21Q9UL25 225 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 C15orf41Q9Y2V0 281 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 PDZD2O15018 2839 aa16.81■□□□□ 0.28
CLN3-202ENST00000355477 KIAA1549Q9HCM3 1950 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 POLQO75417 2590 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 GNB5O14775 395 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 LSM1O15116 133 aaKnown RBP16.8■□□□□ 0.28
CLN3-202ENST00000355477 REM1O75628 298 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 TRAPPC6AO75865 159 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 MC3RP41968 323 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 ETV4P43268 484 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 CDK9P50750 372 aaKnown RBP16.8■□□□□ 0.28
CLN3-202ENST00000355477 WLSQ5T9L3 541 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 TIGD3Q6B0B8 471 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 ANKRD26P1Q6NSI1 321 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 TMEM81Q6P7N7 255 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 TMEM107Q6UX40 140 aa16.8■□□□□ 0.28
CLN3-202ENST00000355477 CCDC71Q8IV32 467 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms