RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 SSR4P51571 173 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 TUBA3CQ13748 450 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 LASP1Q14847 261 aaKnown RBP20.47■□□□□ 0.87
SHMT1-203ENST00000354098 GTDC1Q4AE62 458 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 MFSD12Q6NUT3 480 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 TUBA3EQ6PEY2 450 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 C6orf120Q7Z4R8 191 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 PRR22Q8IZ63 422 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 TMEM156Q8N614 296 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 C17orf47Q8NEP4 570 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 OR56A1Q8NGH5 318 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 WBP1Q96G27 269 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 BTBD9Q96Q07 612 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 CCDC106Q9BWC9 280 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 MYLK2Q9H1R3 596 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 ABI3Q9P2A4 366 aa20.47■□□□□ 0.87
SHMT1-203ENST00000354098 PTPN6P29350 595 aa20.46■□□□□ 0.87
SHMT1-203ENST00000354098 CASP9P55211 416 aa20.46■□□□□ 0.87
SHMT1-203ENST00000354098 DCAF7P61962 342 aa20.46■□□□□ 0.87
SHMT1-203ENST00000354098 ARG2P78540 354 aa20.46■□□□□ 0.87
SHMT1-203ENST00000354098 GKAP1Q5VSY0 366 aaPredicted RBP20.46■□□□□ 0.87
SHMT1-203ENST00000354098 LYPD8Q6UX82 237 aa20.46■□□□□ 0.87
SHMT1-203ENST00000354098 SLC44A2Q8IWA5 706 aaPredicted RBP20.46■□□□□ 0.87
SHMT1-203ENST00000354098 SLC16A11Q8NCK7 471 aa20.46■□□□□ 0.87
SHMT1-203ENST00000354098 OR4N2Q8NGD1 307 aa20.46■□□□□ 0.87
SHMT1-203ENST00000354098 MOAP1Q96BY2 351 aa20.46■□□□□ 0.87
SHMT1-203ENST00000354098 UTP23Q9BRU9 249 aaKnown RBP20.46■□□□□ 0.87
SHMT1-203ENST00000354098 SLC35A5Q9BS91 424 aa20.46■□□□□ 0.87
SHMT1-203ENST00000354098 LMF2Q9BU23 707 aaKnown RBP20.46■□□□□ 0.87
SHMT1-203ENST00000354098 PAIP1Q9H074 479 aaKnown RBP20.46■□□□□ 0.87
SHMT1-203ENST00000354098 SLC25A18Q9H1K4 315 aa20.46■□□□□ 0.87
SHMT1-203ENST00000354098 MRGBPQ9NV56 204 aa20.46■□□□□ 0.87
SHMT1-203ENST00000354098 VPS4AQ9UN37 437 aa20.46■□□□□ 0.87
SHMT1-203ENST00000354098 CAPN7Q9Y6W3 813 aa20.46■□□□□ 0.87
SHMT1-203ENST00000354098 LOC100653049A0A140TA62 436 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 DYTNA2CJ06 578 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 FRG2CA6NGY1 282 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 KRT34O76011 436 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 ACP2P11117 423 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 ADSLP30566 484 aaPredicted RBP20.45■□□□□ 0.86
SHMT1-203ENST00000354098 TRHRP34981 398 aaPredicted RBP20.45■□□□□ 0.86
SHMT1-203ENST00000354098 MAP3K8P41279 467 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 RPS26P62854 115 aaKnown RBP20.45■□□□□ 0.86
SHMT1-203ENST00000354098 OC90Q02509 493 aaPredicted RBP20.45■□□□□ 0.86
SHMT1-203ENST00000354098 SPINK14Q6IE38 97 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 IL20RBQ6UXL0 311 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 RETREG3Q86VR2 466 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 ZNF227Q86WZ6 799 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 ZADH2Q8N4Q0 377 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 RBMXL3Q8N7X1 1067 aaKnown RBP20.45■□□□□ 0.86
SHMT1-203ENST00000354098 SLC22A8Q8TCC7 542 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 ASB15Q8WXK1 588 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 SLC9A6Q92581 669 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 HOXB13Q92826 284 aaPredicted RBP20.45■□□□□ 0.86
SHMT1-203ENST00000354098 SIGLEC12Q96PQ1 595 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 UBL7Q96S82 380 aaPredicted RBP20.45■□□□□ 0.86
SHMT1-203ENST00000354098 MFRPQ9BY79 579 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 RNF32Q9H0A6 362 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 NDUFAF1Q9Y375 327 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 OR5H15A6NDH6 313 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 ANP32DO95626 131 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 TRPC1P48995 793 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 HLCSP50747 726 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 TREML1Q86YW5 311 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 TAGAPQ8N103 731 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 CDRT4Q8N9R6 151 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 TSPEARQ8WU66 669 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 TM9SF4Q92544 642 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 JADE3Q92613 823 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 SERHL2Q9H4I8 314 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 PCDHB14Q9Y5E9 798 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 NPFFR2Q9Y5X5 522 aa20.45■□□□□ 0.86
SHMT1-203ENST00000354098 IGSF10Q6WRI0 2623 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 FBP2O00757 339 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 ANGPT2O15123 496 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 SLC22A2O15244 555 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 ABCD3P28288 659 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 GABRA3P34903 492 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 CYB561P49447 251 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 ZNHIT3Q15649 155 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-203ENST00000354098 DUSP5Q16690 384 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 EXOSC6Q5RKV6 272 aaKnown RBP20.44■□□□□ 0.86
SHMT1-203ENST00000354098 SAXO2Q658L1 398 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 BHLHB9Q6PI77 547 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 SNX32Q86XE0 403 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 SLC15A4Q8N697 577 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 TRIML2Q8N7C3 387 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 PIK3R3Q92569 461 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 HSPBAP1Q96EW2 488 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 AURKBQ96GD4 344 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-203ENST00000354098 PHF12Q96QT6 1004 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 LRFN1Q9P244 771 aa20.44■□□□□ 0.86
SHMT1-203ENST00000354098 LEF1Q9UJU2 399 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-203ENST00000354098 A0A096LPI6 279 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 TO15178 435 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 ACOX3O15254 700 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 ATXN7O15265 892 aaPredicted RBP20.43■□□□□ 0.86
SHMT1-203ENST00000354098 NEURL1O76050 574 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 SFTPCP11686 197 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 HOXB9P17482 250 aaPredicted RBP20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms