RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 SYT14P1Q58G82 188 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 PAQR6Q6TCH4 344 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 VRK2Q86Y07 508 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 NANOGP1Q8N7R0 232 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 FAM83FQ8NEG4 500 aaPredicted RBP20.46■□□□□ 0.87
SHMT1-202ENST00000352886 KAT2AQ92830 837 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 FAM131CQ96AQ9 280 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 SCARF2Q96GP6 870 aaPredicted RBP20.46■□□□□ 0.87
SHMT1-202ENST00000352886 LRR1Q96L50 414 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 ZNF681Q96N22 645 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 CNPPD1Q9BV87 410 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 PAIP2BQ9ULR5 123 aaKnown RBP20.46■□□□□ 0.87
SHMT1-202ENST00000352886 TICRRQ7Z2Z1 1910 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 NARSO43776 548 aaKnown RBP20.46■□□□□ 0.87
SHMT1-202ENST00000352886 HBQ1P09105 142 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 AK4P27144 223 aaPredicted RBP20.46■□□□□ 0.87
SHMT1-202ENST00000352886 GTF2E2P29084 291 aaKnown RBP20.46■□□□□ 0.87
SHMT1-202ENST00000352886 NTSR1P30989 418 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 CLDN2P57739 230 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 CDK5Q00535 292 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 COL9A2Q14055 689 aaPredicted RBP20.46■□□□□ 0.87
SHMT1-202ENST00000352886 PRAMEF8Q5VWM4 474 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 PRAMEF7Q5VXH5 474 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 PBX4Q9BYU1 374 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 PLA2G12AQ9BZM1 189 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 POLR2J2Q9GZM3 115 aaKnown RBP20.46■□□□□ 0.87
SHMT1-202ENST00000352886 NUAK2Q9H093 628 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 OR6C2Q9NZP2 312 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 MKLN1Q9UL63 735 aa20.46■□□□□ 0.87
SHMT1-202ENST00000352886 MED26O95402 600 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 CEBPEQ15744 281 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 ENTPD8Q5MY95 495 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 RD3Q7Z3Z2 195 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 KCNS3Q9BQ31 491 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 GPR55Q9Y2T6 319 aaPredicted RBP20.45■□□□□ 0.86
SHMT1-202ENST00000352886 UGT2A1Q9Y4X1 527 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 A0A087WUU8 490 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 MYL12BO14950 172 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 ALPPP05187 535 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 TGM3Q08188 693 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 VN1R4Q7Z5H5 301 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 PAQR7Q86WK9 346 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 KIF18BQ86Y91 864 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 NRROSQ86YC3 692 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 POC5Q8NA72 575 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 IL17RCQ8NAC3 791 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 PROKR2Q8NFJ6 384 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 EGLN3Q9H6Z9 239 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 SLC13A4Q9UKG4 626 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 F5P12259 2224 aa20.45■□□□□ 0.86
SHMT1-202ENST00000352886 NR2F6P10588 404 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 LAMP2P13473 410 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 GSTM3P21266 225 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 SNRPNP63162 240 aaKnown RBP20.44■□□□□ 0.86
SHMT1-202ENST00000352886 SNAPC1Q16533 368 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 ENPP7Q6UWV6 458 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 MTSS1LQ765P7 747 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 C16orf62Q7Z3J2 963 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 HTRA1Q92743 480 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 ZNF582Q96NG8 517 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-202ENST00000352886 ASPNQ9BXN1 380 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 C6orf106Q9H6K1 298 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-202ENST00000352886 SP140LQ9H930 580 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 LYARQ9NX58 379 aaKnown RBP20.44■□□□□ 0.86
SHMT1-202ENST00000352886 CPSF4LA6NMK7 179 aaKnown RBP20.44■□□□□ 0.86
SHMT1-202ENST00000352886 WWP2O00308 870 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 SYT5O00445 386 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 ASNA1O43681 348 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 ZNF888P0CJ79 500 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-202ENST00000352886 ALOX12P18054 663 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 COL9A1P20849 921 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 PSMA1P25786 263 aaKnown RBP20.44■□□□□ 0.86
SHMT1-202ENST00000352886 SMSP52788 366 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 C1DQ13901 141 aaKnown RBP20.44■□□□□ 0.86
SHMT1-202ENST00000352886 SLC25A30Q5SVS4 291 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 RNLSQ5VYX0 342 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 SDE2Q6IQ49 451 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 TRIM69Q86WT6 500 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 OR52I1Q8NGK6 324 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 OR1E3Q8WZA6 343 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 GAL3ST3Q96A11 431 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 CDCA3Q99618 268 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-202ENST00000352886 SLX1AQ9BQ83 275 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 RACGAP1Q9H0H5 632 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 CA5BQ9Y2D0 317 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 SCN2AQ99250 2005 aa20.44■□□□□ 0.86
SHMT1-202ENST00000352886 TRBV23OR9-2A0A075B6M9 112 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 GIMAP1-GIMAP5A0A087WTJ2 511 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 H0Y8X5 98 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 CYP7B1O75881 506 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 ENDOUP21128 410 aaKnown RBP20.43■□□□□ 0.86
SHMT1-202ENST00000352886 SPANXN2Q5MJ10 180 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 ATAD3BQ5T9A4 648 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 SLC35B4Q969S0 331 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 GIMAP5Q96F15 307 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 ARHGDIGQ99819 225 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 GABRG3Q99928 467 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 YIPF2Q9BWQ6 316 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 KLF15Q9UIH9 416 aa20.43■□□□□ 0.86
SHMT1-202ENST00000352886 LIPT1Q9Y234 373 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms