RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 PCDHGB3Q9Y5G1 929 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 PCDH15Q96QU1 1955 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 A8MVJ9 347 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 MYO1GB0I1T2 1018 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 TNFRSF10AO00220 468 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 PGRMC2O15173 223 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 P2RX6O15547 441 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 B3GALT2O43825 422 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 PIAS2O75928 621 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 FADS2O95864 444 aaKnown RBP12.06□□□□□ -0.48
CLK3-201ENST00000345005 SEMG1P04279 462 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 PROS1P07225 676 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 BUD31P41223 144 aaPredicted RBP12.06□□□□□ -0.48
CLK3-201ENST00000345005 ITGA1P56199 1179 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 NCS1P62166 190 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 DGCR6Q14129 220 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 DEFB133Q30KQ1 61 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 SLC48A1Q6P1K1 146 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 CBLL1Q75N03 491 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 ZNF438Q7Z4V0 828 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 UCN3Q969E3 161 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 AMDHD1Q96NU7 426 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 MAPKAP1Q9BPZ7 522 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 COPS4Q9BT78 406 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 CCDC32Q9BV29 185 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 GLIPR2Q9H4G4 154 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 SIAEQ9HAT2 523 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 PRDM9Q9NQV7 894 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 SIRT3Q9NTG7 399 aaPredicted RBP12.06□□□□□ -0.48
CLK3-201ENST00000345005 ADPRHL2Q9NX46 363 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 MS4A12Q9NXJ0 267 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 ACSL6Q9UKU0 697 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 ENTPD4Q9Y227 616 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 SAMHD1Q9Y3Z3 626 aaKnown RBP12.06□□□□□ -0.48
CLK3-201ENST00000345005 U3KQV3 271 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 SDK1Q7Z5N4 2213 aa12.06□□□□□ -0.48
CLK3-201ENST00000345005 CACNA1EQ15878 2313 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 FAM172BPA6NC97 362 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 GLOD5A6NK44 160 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 PRAMEF10O60809 474 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 ERAL1O75616 437 aaKnown RBP12.05□□□□□ -0.48
CLK3-201ENST00000345005 DLGAP3O95886 979 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 KRT8P05787 483 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 NR2F6P10588 404 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 ALOX12P18054 663 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 CSNK2A2P19784 350 aaPredicted RBP12.05□□□□□ -0.48
CLK3-201ENST00000345005 TLX1P31314 330 aaPredicted RBP12.05□□□□□ -0.48
CLK3-201ENST00000345005 TGFBR2P37173 567 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 CAPZBP47756 277 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 MASP1P48740 699 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 FNTBP49356 437 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 CCT3P49368 545 aaKnown RBP12.05□□□□□ -0.48
CLK3-201ENST00000345005 NCBP2P52298 156 aaKnown RBP eCLIP12.05□□□□□ -0.489e-7■■■■□ 24.2
CLK3-201ENST00000345005 DSTNP60981 165 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 PPP1CAP62136 330 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 LSM3P62310 102 aaKnown RBP12.05□□□□□ -0.48
CLK3-201ENST00000345005 RPP38P78345 283 aaKnown RBP12.05□□□□□ -0.48
CLK3-201ENST00000345005 SCARB2Q14108 478 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 ELOAQ14241 798 aaKnown RBP12.05□□□□□ -0.48
CLK3-201ENST00000345005 C14orf28Q4W4Y0 310 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 TMEM236Q5W0B7 351 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 C18orf63Q68DL7 685 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 C6orf120Q7Z4R8 191 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 GALNT5Q7Z7M9 940 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 SETD6Q8TBK2 473 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 ZCCHC10Q8TBK6 192 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 RASSF5Q8WWW0 418 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 MAL2Q969L2 176 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 COL21A1Q96P44 957 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 CCDC3Q9BQI4 270 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 BTBD2Q9BX70 525 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 OR2B2Q9GZK3 357 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 RACGAP1Q9H0H5 632 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 ABCB10Q9NRK6 738 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 SEMA3GQ9NS98 782 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 CRNNQ9UBG3 495 aaPredicted RBP12.05□□□□□ -0.48
CLK3-201ENST00000345005 GRIP1Q9Y3R0 1128 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 CSNK1G3Q9Y6M4 447 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 ZNF780BQ9Y6R6 833 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 NCOR1O75376 2440 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 NINQ8N4C6 2090 aa12.05□□□□□ -0.48
CLK3-201ENST00000345005 SH3BP5O60239 455 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 MAN1A2O60476 641 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 MITFO75030 526 aaPredicted RBP12.04□□□□□ -0.48
CLK3-201ENST00000345005 ARAFP10398 606 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 ST6GAL1P15907 406 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 CPN2P22792 545 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 MPIP34949 423 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 GPC1P35052 558 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 CASP9P55211 416 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 VSX2P58304 361 aaPredicted RBP12.04□□□□□ -0.48
CLK3-201ENST00000345005 CDK6Q00534 326 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 IL1RL1Q01638 556 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 SIGLEC14Q08ET2 396 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 DEFB134Q4QY38 66 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 SPANXN2Q5MJ10 180 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 ZNF544Q6NX49 715 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 TSSK4Q6SA08 328 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 C11orf74Q86VG3 221 aa12.04□□□□□ -0.48
CLK3-201ENST00000345005 WDR5BQ86VZ2 330 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms