RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 RXFP4Q8TDU9 374 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 TRAPPC12Q8WVT3 735 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 FOXRED1Q96CU9 486 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 INTS14Q96SY0 518 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 THAP7Q9BT49 309 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 OSBPL2Q9H1P3 480 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 SMOC2Q9H3U7 446 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 RIMS4Q9H426 269 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 PIF1Q9H611 641 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 ELP3Q9H9T3 547 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 SPATA6Q9NWH7 488 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-201ENST00000338963 CLEC2DQ9UHP7 191 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 CORO2BQ9UQ03 480 aa3.95□□□□□ -1.78
NEDD4-201ENST00000338963 GJE1A6NN92 205 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 H7C417 338 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 DVL1O14640 695 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 MAFKO60675 156 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 GLP2RO95838 553 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CSTAP01040 98 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 LTFP02788 710 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 MT-ND5P03915 603 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 GJB1P08034 283 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ERCC2P18074 760 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 PPIBP23284 216 aaKnown RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 GNA15P30679 374 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CSF2RBP32927 897 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 STK19P49842 368 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 DUSP8Q13202 625 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 OR8G1Q15617 311 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 FAM187BQ17R55 369 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 NSUN5P2Q63ZY6 315 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 PLAG1Q6DJT9 500 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 MOB3CQ70IA8 216 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 PIGZQ86VD9 579 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 KLHDC8BQ8IXV7 354 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CMIPQ8IY22 773 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 UBA3Q8TBC4 463 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 GRHL3Q8TE85 626 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 RNF141Q8WVD5 230 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 PPM1MQ96MI6 270 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 FAM83CQ9BQN1 747 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 NTPCRQ9BSD7 190 aaKnown RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 MIOSQ9NXC5 875 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 COL1A1P02452 1464 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 MEGF6O75095 1541 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 NPIPB8E9PQR5 432 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 F5H5P2 479 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 NCR1O76036 304 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 IQCF3P0C7M6 154 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 STAG3L3P0CL85 134 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 BCKDHAP12694 445 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 NQO2P16083 231 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF37AP17032 561 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 LPOP22079 712 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 HSD11B1P28845 292 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 PRDX5P30044 214 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 HOXC9P31274 260 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CSNK1DP48730 415 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CASP7P55210 303 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 VSX2P58304 361 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 RAB10P61026 200 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CERCAMQ5T4B2 595 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ALKAL2Q6UX46 152 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 SLC44A5Q8NCS7 719 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 OR14K1Q8NGZ2 314 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 OR51A7Q8NH64 312 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 OR1S1Q8NH92 325 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 IP6K1Q92551 441 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 EDEM1Q92611 657 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 TRMT61AQ96FX7 289 aaKnown RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 LRCH3Q96II8 777 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 TPD52L3Q96J77 140 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CXorf58Q96LI9 332 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 TEAD3Q99594 435 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF426Q9BUY5 554 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 MRI1Q9BV20 369 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 WDR11Q9BZH6 1224 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 XYLT2Q9H1B5 865 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 METTL17Q9H7H0 456 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 TRPV4Q9HBA0 871 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 LYRM2Q9NU23 88 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ZDHHC2Q9UIJ5 367 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 RPH3ALQ9UNE2 315 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 NME7Q9Y5B8 376 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ANKRD61A6NGH8 418 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 SMLR1H3BR10 107 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 DLX3O60479 287 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 RPP40O75818 363 aaKnown RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ZFPL1O95159 310 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 THP07101 528 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 GUSBP08236 651 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 EPCAMP16422 314 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 AHRP35869 848 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 PRKAG1P54619 331 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CAMK2GQ13555 558 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 DEFB115Q30KQ5 88 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 MOGAT2Q3SYC2 334 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 RAB41Q5JT25 222 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 TMEM244Q5VVB8 128 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 JMJD6Q6NYC1 403 aaPredicted RBP3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms