RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 FIGLAQ6QHK4 219 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 RNF186Q9NXI6 227 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 VSX1Q9NZR4 365 aaPredicted RBP12.01□□□□□ -0.49
SDC3-201ENST00000336798 NAALAD2Q9Y3Q0 740 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 KIAA0513O60268 411 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 BCAS2O75934 225 aaPredicted RBP12.01□□□□□ -0.49
SDC3-201ENST00000336798 NUDT7P0C024 238 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 ZNF43P17038 809 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 MEDAGQ5VYS4 303 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 STK35Q8TDR2 534 aa12.01□□□□□ -0.49
SDC3-201ENST00000336798 BCL9LQ86UU0 1499 aa12□□□□□ -0.49
SDC3-201ENST00000336798 A0A096LPI6 279 aa12□□□□□ -0.49
SDC3-201ENST00000336798 SH3PXD2BA1X283 911 aa12□□□□□ -0.49
SDC3-201ENST00000336798 SLC1A7O00341 560 aa12□□□□□ -0.49
SDC3-201ENST00000336798 KIAA0355O15063 1070 aa12□□□□□ -0.49
SDC3-201ENST00000336798 SYPP08247 313 aa12□□□□□ -0.49
SDC3-201ENST00000336798 EIF2B1Q14232 305 aaKnown RBP12□□□□□ -0.49
SDC3-201ENST00000336798 ZNF791Q3KP31 576 aaPredicted RBP12□□□□□ -0.49
SDC3-201ENST00000336798 PHF6Q8IWS0 365 aaKnown RBP eCLIP12□□□□□ -0.49
SDC3-201ENST00000336798 FTMTQ8N4E7 242 aa12□□□□□ -0.49
SDC3-201ENST00000336798 TM9SF4Q92544 642 aa12□□□□□ -0.49
SDC3-201ENST00000336798 BOCQ9BWV1 1114 aa12□□□□□ -0.49
SDC3-201ENST00000336798 GCM1Q9NP62 436 aa12□□□□□ -0.49
SDC3-201ENST00000336798 HIF1ANQ9NWT6 349 aa12□□□□□ -0.49
SDC3-201ENST00000336798 MED16Q9Y2X0 877 aa12□□□□□ -0.49
SDC3-201ENST00000336798 SEMA4FO95754 770 aa12□□□□□ -0.49
SDC3-201ENST00000336798 AQP2P41181 271 aa12□□□□□ -0.49
SDC3-201ENST00000336798 ABHD17BQ5VST6 288 aa12□□□□□ -0.49
SDC3-201ENST00000336798 UGT2A3Q6UWM9 527 aa12□□□□□ -0.49
SDC3-201ENST00000336798 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12□□□□□ -0.49
SDC3-201ENST00000336798 ZNF572Q7Z3I7 529 aaPredicted RBP12□□□□□ -0.49
SDC3-201ENST00000336798 ZNF808Q8N4W9 903 aaPredicted RBP12□□□□□ -0.49
SDC3-201ENST00000336798 CNEP1R1Q8N9A8 125 aa12□□□□□ -0.49
SDC3-201ENST00000336798 NR4A3Q92570 626 aa12□□□□□ -0.49
SDC3-201ENST00000336798 KAT6AQ92794 2004 aa12□□□□□ -0.49
SDC3-201ENST00000336798 CREB3L1Q96BA8 519 aa12□□□□□ -0.49
SDC3-201ENST00000336798 DZANK1Q9NVP4 752 aa12□□□□□ -0.49
SDC3-201ENST00000336798 GPR83Q9NYM4 423 aa12□□□□□ -0.49
SDC3-201ENST00000336798 PIGRP01833 764 aa12□□□□□ -0.49
SDC3-201ENST00000336798 OR8U9P0C7N5 309 aa12□□□□□ -0.49
SDC3-201ENST00000336798 IL7P13232 177 aa12□□□□□ -0.49
SDC3-201ENST00000336798 CD70P32970 193 aa12□□□□□ -0.49
SDC3-201ENST00000336798 JAG1P78504 1218 aa12□□□□□ -0.49
SDC3-201ENST00000336798 HTRA3P83110 453 aa12□□□□□ -0.49
SDC3-201ENST00000336798 SCGB2A2Q13296 93 aa12□□□□□ -0.49
SDC3-201ENST00000336798 CDCA2Q69YH5 1023 aaPredicted RBP12□□□□□ -0.49
SDC3-201ENST00000336798 ARHGAP12Q8IWW6 846 aa12□□□□□ -0.49
SDC3-201ENST00000336798 OR5L2Q8NGL0 311 aa12□□□□□ -0.49
SDC3-201ENST00000336798 OR5H2Q8NGV7 314 aa12□□□□□ -0.49
SDC3-201ENST00000336798 ISOC1Q96CN7 298 aa12□□□□□ -0.49
SDC3-201ENST00000336798 ACTR6Q9GZN1 396 aa12□□□□□ -0.49
SDC3-201ENST00000336798 FAM230AA0A1W2PPH8 454 aa12□□□□□ -0.49
SDC3-201ENST00000336798 H3BQ06 376 aaPredicted RBP12□□□□□ -0.49
SDC3-201ENST00000336798 SOCS5O75159 536 aa12□□□□□ -0.49
SDC3-201ENST00000336798 AMY2AP04746 511 aa12□□□□□ -0.49
SDC3-201ENST00000336798 FGF3P11487 239 aaPredicted RBP12□□□□□ -0.49
SDC3-201ENST00000336798 HOXD8P13378 290 aaPredicted RBP12□□□□□ -0.49
SDC3-201ENST00000336798 CAPN3P20807 821 aa12□□□□□ -0.49
SDC3-201ENST00000336798 GRIA2P42262 883 aa12□□□□□ -0.49
SDC3-201ENST00000336798 CSNK2A1P68400 391 aaPredicted RBP12□□□□□ -0.49
SDC3-201ENST00000336798 RUNX3Q13761 415 aa12□□□□□ -0.49
SDC3-201ENST00000336798 OR4D1Q15615 310 aa12□□□□□ -0.49
SDC3-201ENST00000336798 LTC4SQ16873 150 aa12□□□□□ -0.49
SDC3-201ENST00000336798 ZNF765Q7L2R6 523 aa12□□□□□ -0.49
SDC3-201ENST00000336798 KLHDC8AQ8IYD2 350 aa12□□□□□ -0.49
SDC3-201ENST00000336798 CSNK2A3Q8NEV1 391 aa12□□□□□ -0.49
SDC3-201ENST00000336798 RPLP0P6Q8NHW5 317 aa12□□□□□ -0.49
SDC3-201ENST00000336798 C12orf42Q96LP6 360 aa12□□□□□ -0.49
SDC3-201ENST00000336798 SERTAD4Q9NUC0 356 aa12□□□□□ -0.49
SDC3-201ENST00000336798 SGCEO43556 437 aa12□□□□□ -0.49
SDC3-201ENST00000336798 FGL2Q14314 439 aa12□□□□□ -0.49
SDC3-201ENST00000336798 KIAA0319Q5VV43 1072 aa12□□□□□ -0.49
SDC3-201ENST00000336798 SLC18B1Q6NT16 456 aa12□□□□□ -0.49
SDC3-201ENST00000336798 METTL2BQ6P1Q9 378 aaKnown RBP12□□□□□ -0.49
SDC3-201ENST00000336798 PLXDC1Q8IUK5 500 aa12□□□□□ -0.49
SDC3-201ENST00000336798 ZNF382Q96SR6 550 aa12□□□□□ -0.49
SDC3-201ENST00000336798 YTHDF1Q9BYJ9 559 aaKnown RBP12□□□□□ -0.49
SDC3-201ENST00000336798 MVB12BQ9H7P6 319 aa12□□□□□ -0.49
SDC3-201ENST00000336798 PCDHB10Q9UN67 800 aa12□□□□□ -0.49
SDC3-201ENST00000336798 SGK494L7N484 410 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 SYT7O43581 403 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 PFKMP08237 780 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 GJA5P36382 358 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 SCAPQ12770 1279 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 UGT3A2Q3SY77 523 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 PIGGQ5H8A4 983 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 OR52N2Q8NGI0 321 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 Q9Y3F1 56 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 LILRB5O75023 590 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 ZNF888P0CJ79 500 aaPredicted RBP11.99□□□□□ -0.49
SDC3-201ENST00000336798 CD34P28906 385 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 APLNRP35414 380 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 PRKXP51817 358 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 SNRPD2P62316 118 aaKnown RBP11.99□□□□□ -0.49
SDC3-201ENST00000336798 CHRNEQ04844 493 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 LSAMPQ13449 338 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 VHLLQ6RSH7 139 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 ZNF551Q7Z340 670 aaPredicted RBP11.99□□□□□ -0.49
SDC3-201ENST00000336798 TMEM25Q86YD3 366 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 CHST14Q8NCH0 376 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms