RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 MIPEPQ99797 713 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SPATA25Q9BR10 227 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 CCDC77Q9BR77 488 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 MRPL1Q9BYD6 325 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 CIPCQ9C0C6 399 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 HOXD1Q9GZZ0 328 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 METTL7AQ9H8H3 244 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 LINC00574Q9H8X3 128 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 TAS2R7Q9NYW3 318 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 IL20Q9NYY1 176 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 EHD3Q9NZN3 535 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 MYOTQ9UBF9 498 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ZDHHC8Q9ULC8 765 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 EMC9Q9Y3B6 208 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 USH1CQ9Y6N9 552 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 NSD1Q96L73 2696 aaPredicted RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 FADS2P1A8MWK0 482 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 TMEM114B3SHH9 223 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 NDC80O14777 642 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 TFECO14948 347 aaPredicted RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 PIP5K1BO14986 540 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SPTLC2O15270 562 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 TSPAN2O60636 221 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 AVILO75366 819 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 OR2B3O76000 313 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 WISP3O95389 354 aaPredicted RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 BCL10O95999 233 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 FHP07954 510 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 FRMD6-AS1P0C7T7 363 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 APEHP13798 732 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 HSD3B1P14060 373 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 MMP9P14780 707 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 PECAM1P16284 738 aaPredicted RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 FSTP19883 344 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 IGFBP6P24592 240 aaPredicted RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 HSD3B2P26439 372 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 GRIA3P42263 894 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 FRKP42685 505 aaPredicted RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 MRPL19P49406 292 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 GPR85P60893 370 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 GUCY1B3Q02153 619 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 CYP27A1Q02318 531 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SLAMF1Q13291 335 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 KCNJ8Q15842 424 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 GSTA3Q16772 222 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 CCDC14Q49A88 953 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 KHDC1Q4VXA5 237 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 BOLA3Q53S33 107 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 RBM20Q5T481 1227 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 LPCAT4Q643R3 524 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 GLT8D1Q68CQ7 371 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SLC27A4Q6P1M0 643 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 HSD11B1LQ7Z5J1 315 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ZER1Q7Z7L7 766 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ANKRD46Q86W74 232 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 LAS2Q8IYD9 372 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ZZZ3Q8IYH5 903 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 TMEM130Q8N3G9 435 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 OR56A3Q8NH54 315 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SMPDL3AQ92484 453 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 KRT35Q92764 455 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ADIPOR1Q96A54 375 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 PHF21AQ96BD5 680 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 CCDC34Q96HJ3 373 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF845Q96IR2 970 aaPredicted RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 LPAR4Q99677 370 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SLC30A2Q9BRI3 323 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 TSGA10Q9BZW7 698 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 OR11A1Q9GZK7 315 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 OPA3Q9H6K4 179 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF665Q9H7R5 613 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 DDX28Q9NUL7 540 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 TXLNGQ9NUQ3 528 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 STX18Q9P2W9 335 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 SAE1Q9UBE0 346 aaPredicted RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 GULP1Q9UBP9 304 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 VPS28Q9UK41 221 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 PROCRQ9UNN8 238 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 PCDHA3Q9Y5H8 950 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 AUP1Q9Y679 476 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 FLGP20930 4061 aaPredicted RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 CFAP54Q96N23 3096 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 PRRC2CQ9Y520 2896 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 PIKFYVEQ9Y2I7 2098 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 IGHV2-70DA0A0C4DH43 119 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 KIR2DL5BA0A0G2JN68 375 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 KIR2DL5BA0A0G2JPC4 375 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 CDHR4A6H8M9 788 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 FAM90A8PA6NJQ4 464 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 OR5H1A6NKK0 313 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 TMEM150CB9EJG8 249 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 C11orf94C9JXX5 98 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 RAD51CO43502 376 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 KRT86O43790 486 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 EIF4E2O60573 245 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 PPM1BO75688 479 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 RSL1D1O76021 490 aaKnown RBP1.32□□□□□ -2.2
LINC00643-201ENST00000334389 IFNW1P05000 195 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 ATP1B1P05026 303 aa1.32□□□□□ -2.2
LINC00643-201ENST00000334389 CBR1P16152 277 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms