RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 DEPPQ9NTK1 212 aa12.9□□□□□ -0.34
LIMS1-201ENST00000332345 INTS9Q9NV88 658 aaKnown RBP12.9□□□□□ -0.34
LIMS1-201ENST00000332345 CHCHD2Q9Y6H1 151 aaPredicted RBP12.9□□□□□ -0.34
LIMS1-201ENST00000332345 UBR5O95071 2799 aaPredicted RBP12.9□□□□□ -0.34
LIMS1-201ENST00000332345 A0A1W2PRB8 838 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 ANKRD33BA6NCL7 494 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 TTC36A6NLP5 189 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 G3V3Y1 287 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 ACOT7O00154 380 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 SASH3O75995 380 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 ABCB1P08183 1280 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-201ENST00000332345 CT45A8P0DMV1 189 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 CT45A9P0DMV2 189 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 KRT20P35900 424 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 RFC3P40938 356 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 FBXW4P57775 412 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 C21orf58P58505 322 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 PPIAP62937 165 aaKnown RBP12.89□□□□□ -0.35
LIMS1-201ENST00000332345 KCNJ2P63252 427 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 PLCXD2Q0VAA5 305 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 UBAP2LQ14157 1087 aaKnown RBP12.89□□□□□ -0.35
LIMS1-201ENST00000332345 NNATQ16517 81 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.89□□□□□ -0.35
LIMS1-201ENST00000332345 LSM12Q3MHD2 195 aaKnown RBP12.89□□□□□ -0.35
LIMS1-201ENST00000332345 ZNF385BQ569K4 471 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 CT45A2Q5DJT8 189 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 RNFT1Q5M7Z0 435 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 TMEM198Q66K66 360 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 PAOXQ6QHF9 649 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 SPATA19Q7Z5L4 167 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 SLC22A16Q86VW1 577 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 SIAH3Q8IW03 269 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 SLC44A2Q8IWA5 706 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-201ENST00000332345 RIMKLAQ8IXN7 391 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 PRR22Q8IZ63 422 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 SLC34A3Q8N130 599 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 GHDCQ8N2G8 530 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 FAM26EQ8N5C1 309 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 DIO2Q92813 273 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 OMA1Q96E52 524 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 VSTM2LQ96N03 204 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 DPY30Q9C005 99 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 BHLHE41Q9C0J9 482 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-201ENST00000332345 IL1RL2Q9HB29 575 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 MARCOQ9UEW3 520 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-201ENST00000332345 OSGIN2Q9Y236 505 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 OR10H1Q9Y4A9 318 aa12.89□□□□□ -0.35
LIMS1-201ENST00000332345 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.89□□□□□ -0.35
LIMS1-201ENST00000332345 TENM4Q6N022 2769 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 HS6ST1O60243 411 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 REM1O75628 298 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 SNX4O95219 450 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 LAMP1P11279 417 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 PIGAP37287 484 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 DNASE1L1P49184 302 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 PRKAG1P54619 331 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 DIO3P55073 304 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 KCNK10P57789 538 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 MRPS22P82650 360 aaKnown RBP12.88□□□□□ -0.35
LIMS1-201ENST00000332345 PRR5P85299 388 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 ZNF155Q12901 538 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-201ENST00000332345 PGS1Q32NB8 556 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 CYP27C1Q4G0S4 372 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 PRAMEF20Q5VT98 475 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 OGFOD2Q6N063 350 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 PACS2Q86VP3 889 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 KRTCAP2Q8N6L1 136 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 NUP43Q8NFH3 380 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 SPPL2AQ8TCT8 520 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 OR5P2Q8WZ92 322 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 TMCO6Q96DC7 493 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 DOHHQ9BU89 302 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 DUSP26Q9BV47 211 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 TSPAN10Q9H1Z9 355 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-201ENST00000332345 ZFP64Q9NPA5 681 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 NTMQ9P121 344 aa12.88□□□□□ -0.35
LIMS1-201ENST00000332345 MRTO4Q9UKD2 239 aaKnown RBP12.88□□□□□ -0.35
LIMS1-201ENST00000332345 CNOT11Q9UKZ1 510 aaKnown RBP12.88□□□□□ -0.35
LIMS1-201ENST00000332345 BOKQ9UMX3 212 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-201ENST00000332345 A0A1B0GUH1 482 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 PINLYPA6NC86 204 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 OR6C70A6NIJ9 312 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 SDHDO14521 159 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 EMC8O43402 210 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 GLSO94925 669 aaPredicted RBP12.87□□□□□ -0.35
LIMS1-201ENST00000332345 AGFG2O95081 481 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 PSMG1O95456 288 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 EPHA3P29320 983 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 CASP3P42574 277 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 PNLIPRP2P54317 469 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 CASP6P55212 293 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 CORO7P57737 925 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 FOXO1Q12778 655 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 SNTA1Q13424 505 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 EFR3AQ14156 821 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 SLC10A1Q14973 349 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 HYAL4Q2M3T9 481 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 VPS26BQ4G0F5 336 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 NXNQ6DKJ4 435 aa12.87□□□□□ -0.35
LIMS1-201ENST00000332345 ZCCHC12Q6PEW1 402 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms