RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 SULT1A3P0DMM9 295 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SULT1A4P0DMN0 295 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 CLUP10909 449 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 ITPKAP23677 461 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 PAX6P26367 422 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SDHAP31040 664 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 ELAVL2Q12926 359 aaKnown RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 VEZF1Q14119 521 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 KRT33BQ14525 404 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 GRIN2CQ14957 1233 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 GPRC6AQ5T6X5 926 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 ZNF57Q68EA5 555 aaPredicted RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 CERS6Q6ZMG9 384 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 FJX1Q86VR8 437 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SERPINA12Q8IW75 414 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 TEX19Q8NA77 164 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 THAP6Q8TBB0 222 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 GATAD2BQ8WXI9 593 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 GGHQ92820 318 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 RHBDF1Q96CC6 855 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 CXorf40BQ96DE9 158 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 TCEAL4Q96EI5 215 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SLC39A8Q9C0K1 460 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 TKTL2Q9H0I9 626 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SEMA6CQ9H3T2 930 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 FBXO44Q9H4M3 255 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SPACA1Q9HBV2 294 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 AKT3Q9Y243 479 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 NUBP2Q9Y5Y2 271 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 NUP210Q8TEM1 1887 aaPredicted RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 CCDC163A0A0D9SF12 145 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 ZNF670-ZNF695F2Z2N8 137 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 GFRA2O00451 464 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SLC16A5O15375 505 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 RRP8O43159 456 aaKnown RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 KHDRBS3O75525 346 aaKnown RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 EFEMP2O95967 443 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 LGI1O95970 557 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 IFNA2P01563 188 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 F7P08709 466 aaPredicted RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SMIM10L2AP0DMW4 78 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SMIM10L2BP0DMW5 78 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 CXCL2P19875 107 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 PTPN6P29350 595 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 DDTP30046 118 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 KIR3DL2P43630 455 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 GPR3P46089 330 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 ACLYP53396 1101 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 CDKN2DP55273 166 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 PDZK1IP1Q13113 114 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 LRRC32Q14392 662 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 GUCA2BQ16661 112 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SYTL3Q4VX76 610 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 HSDL2Q6YN16 418 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 MBOAT1Q6ZNC8 495 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 GDPGP1Q6ZNW5 385 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 RABEPKQ7Z6M1 372 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 NAXDQ8IW45 347 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 CBARPQ8N350 705 aaPredicted RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 OR2T11Q8NH01 316 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 PROKR1Q8TCW9 393 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 GPBAR1Q8TDU6 330 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 CNOT9Q92600 299 aaKnown RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 ELMOD3Q96FG2 381 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 PCED1BQ96HM7 432 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 LRIG1Q96JA1 1093 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 EPYCQ99645 322 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 MGLLQ99685 303 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 CPPED1Q9BRF8 314 aaPredicted RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 C7orf50Q9BRJ6 194 aaKnown RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 MAGEH1Q9H213 219 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 XKR8Q9H6D3 395 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 PPP1R3EQ9H7J1 279 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 ASCL3Q9NQ33 180 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 CXorf65A6NEN9 183 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 PIP5K1BO14986 540 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 ADAMDEC1O15204 470 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 RP2O75695 350 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SERPINA3P01011 423 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 JCHAINP01591 159 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 HEXAP06865 529 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SYPP08247 313 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 RNH1P13489 461 aaKnown RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 PPM1AP35813 382 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 MMP12P39900 470 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 TTPAP49638 278 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 DAPP51397 102 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 DHODHQ02127 395 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 FOXO1Q12778 655 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 MRPL58Q14197 206 aaKnown RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 MED22Q15528 200 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 CCDC85BQ15834 202 aaPredicted RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SSX1Q16384 188 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 FAM110CQ1W6H9 321 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 USP39Q53GS9 565 aaKnown RBP6.29□□□□□ -1.4
ZNF540-201ENST00000316433 PLA1AQ53H76 456 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 PAGE3Q5JUK9 113 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SLC25A30Q5SVS4 291 aa6.29□□□□□ -1.4
ZNF540-201ENST00000316433 SFRP5Q5T4F7 317 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms