RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 INPPL1O15357 1258 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 GNRH1P01148 92 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 ACP2P11117 423 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 AOAHP28039 575 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 SOX2P48431 317 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 ACVR1Q04771 509 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 IRF5Q13568 498 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 ATXN7L3Q14CW9 347 aaPredicted RBP18.32■□□□□ 0.52
USP48-201ENST00000308271 PLK5Q496M5 336 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 NRROSQ86YC3 692 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 CPOQ8IVL8 374 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 NRMQ8IXM6 262 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 SPACA7Q96KW9 195 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 TEX10Q9NXF1 929 aaPredicted RBP18.32■□□□□ 0.52
USP48-201ENST00000308271 TAS2R16Q9NYV7 291 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 CACNG3O60359 315 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 PLATP00750 562 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 AHCYP23526 432 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 WASP42768 502 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 TXNL4BQ9NX01 149 aaKnown RBP18.32■□□□□ 0.52
USP48-201ENST00000308271 MRPL15Q9P015 296 aaKnown RBP18.32■□□□□ 0.52
USP48-201ENST00000308271 NPIPB15A6NHN6 443 aaPredicted RBP18.32■□□□□ 0.52
USP48-201ENST00000308271 A6NL46 340 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 F5H0A9 414 aaPredicted RBP18.32■□□□□ 0.52
USP48-201ENST00000308271 HBA1P69905 142 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 FGL1Q08830 312 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 CTF1Q16619 201 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 AAK1Q2M2I8 961 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 PDZD3Q86UT5 571 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 DNAJC5GQ8N7S2 189 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 HS6ST2Q96MM7 605 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 SAP130Q9H0E3 1048 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 TMEM185BQ9H7F4 350 aa18.32■□□□□ 0.52
USP48-201ENST00000308271 HYKKA2RU49 373 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 HHLA1C9JL84 531 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 SOCS7O14512 581 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 GNSP15586 552 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 SLC5A12Q1EHB4 618 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 DMRT3Q9NQL9 472 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 OSGIN1Q9UJX0 560 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 PLEKHA6Q9Y2H5 1048 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 A0A1B0GVT2 93 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 TEX46H3BTG2 121 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 LEFTY2O00292 366 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 GFRA2O00451 464 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 CASC3O15234 703 aaKnown RBP18.31■□□□□ 0.52
USP48-201ENST00000308271 MTRF1O75570 445 aaKnown RBP18.31■□□□□ 0.52
USP48-201ENST00000308271 APODP05090 189 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 TFPIP10646 304 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 HOXD9P28356 352 aaPredicted RBP18.31■□□□□ 0.52
USP48-201ENST00000308271 GABRA5P31644 462 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 ILF3Q12906 894 aaKnown RBP eCLIP18.31■□□□□ 0.524e-7■□□□□ 9.7
USP48-201ENST00000308271 SELENBP1Q13228 472 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 JAGN1Q8N5M9 183 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 OR4K14Q8NGD5 310 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 SPRYD4Q8WW59 207 aaPredicted RBP18.31■□□□□ 0.52
USP48-201ENST00000308271 TRIM43Q96BQ3 446 aaPredicted RBP18.31■□□□□ 0.52
USP48-201ENST00000308271 OTUB2Q96DC9 234 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 IL17FQ96PD4 163 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 GASTP01350 101 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 ARSBP15848 533 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 PRKACAP17612 351 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 SLAMF1Q13291 335 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 TMEM163Q8TC26 289 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 THEM6Q8WUY1 208 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 NSMAFQ92636 917 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 PRRC1Q96M27 445 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 TMEM98Q9Y2Y6 226 aa18.31■□□□□ 0.52
USP48-201ENST00000308271 J3KTA2 159 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 ILKQ13418 452 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 GRIN2CQ14957 1233 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 TMEM35AQ53FP2 167 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 CATSPEREQ5SY80 951 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 FAM69AQ5T7M9 428 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 ARHGAP11AQ6P4F7 1023 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 CPA6Q8N4T0 437 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 L3MBTL4Q8NA19 623 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 CNOT9Q92600 299 aaKnown RBP18.3■□□□□ 0.52
USP48-201ENST00000308271 ZNF436Q9C0F3 470 aaPredicted RBP18.3■□□□□ 0.52
USP48-201ENST00000308271 PLEKHA1Q9HB21 404 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 POLR1CO15160 346 aaPredicted RBP18.3■□□□□ 0.52
USP48-201ENST00000308271 GKN3PP0CG01 181 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 DDCP20711 480 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 APEX1P27695 318 aaKnown RBP18.3■□□□□ 0.52
USP48-201ENST00000308271 NAA10P41227 235 aaPredicted RBP18.3■□□□□ 0.52
USP48-201ENST00000308271 ART1P52961 327 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 MCCD1P59942 119 aaPredicted RBP18.3■□□□□ 0.52
USP48-201ENST00000308271 MC1RQ01726 317 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 OR56A3Q8NH54 315 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 SLC28A3Q9HAS3 691 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 LEXMQ3ZCV2 418 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 C3orf38Q5JPI3 329 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 VITQ6UXI7 678 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 C3P1Q6ZMU1 363 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 DPF3Q92784 378 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 CNIH4Q9P003 139 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 ACSL5Q9ULC5 683 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 FCER2P06734 321 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 PKLRP30613 574 aa18.3■□□□□ 0.52
USP48-201ENST00000308271 CBX5P45973 191 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms