RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SUMF2Q8NBJ7 301 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 FCAMRQ8WWV6 532 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ZNF75AQ96N20 296 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 RNF32Q9H0A6 362 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 KCNJ16Q9NPI9 418 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 TXNL4BQ9NX01 149 aaKnown RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 SEC14L6B5MCN3 397 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 FLRT2O43155 660 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 IGSF6O95976 241 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 H2AFB2P0C5Z0 115 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 MSX1P28360 303 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SERPINA4P29622 427 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 CD6P30203 668 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 HNRNPKP61978 463 aaKnown RBP eCLIP6.1□□□□□ -1.43
VPS35-201ENST00000299138 RAB40BQ12829 278 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 NTRK2Q16620 822 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 PAGE3Q5JUK9 113 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 FRG2Q64ET8 278 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 STEAP3Q658P3 488 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 RPL13AP3Q6NVV1 102 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 GOLGA7Q7Z5G4 137 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 TSPAN33Q86UF1 283 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 KLHL36Q8N4N3 616 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ZNF676Q8N7Q3 588 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 FAM110BQ8TC76 370 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ZNF514Q96K75 400 aaPredicted RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 FRG2BQ96QU4 278 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 OR2M2Q96R28 347 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 PIP5K1AQ99755 562 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 DUSP26Q9BV47 211 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 FAIM2Q9BWQ8 316 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 RBCK1Q9BYM8 510 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 TMEM38AQ9H6F2 299 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 EMC7Q9NPA0 242 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 TMEM129A0AVI4 362 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 KIAA1324LA8MWY0 1029 aaPredicted RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 DNAJB6O75190 326 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ZNF823P16415 610 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 RBMXP38159 391 aaKnown RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 VEGFCP49767 419 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 HMGA2P52926 109 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 DSTNP60981 165 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 HEPACAMQ14CZ8 416 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 TMPRSS9Q7Z410 1059 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 TPRA1Q86W33 373 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 PARP16Q8N5Y8 322 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 RCBTB1Q8NDN9 531 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SEMA6DQ8NFY4 1073 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 FBXO32Q969P5 355 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SLAMF9Q96A28 289 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 AMBRA1Q9C0C7 1298 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 POLR2J3Q9H1A7 115 aaKnown RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 ZNF490Q9ULM2 529 aaPredicted RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 SRCAPQ6ZRS2 3230 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 POM121CA8CG34 1229 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 C9JVG2 144 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 AGR2O95994 175 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 MT-CYBP00156 380 aaPredicted RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 SHMT2P34897 504 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 RAB28P51157 221 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 DSC3Q14574 896 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SIGIRRQ6IA17 410 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 NRROSQ86YC3 692 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 FAM185AQ8N0U4 392 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 LGI4Q8N135 537 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 DNASE1L2Q92874 299 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 BORCS8Q96FH0 119 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SDSLQ96GA7 329 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SLC25A44Q96H78 314 aaPredicted RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 GCM1Q9NP62 436 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SLC17A6Q9P2U8 582 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SCP2D1Q9UJQ7 156 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 GMEB2Q9UKD1 530 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 CSNK1G3Q9Y6M4 447 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SBF2Q86WG5 1849 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 LRP5LA4QPB2 252 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 GLTPD2A6NH11 291 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ARGFXA6NJG6 315 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ZNF850A8MQ14 1090 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 KRBOX1C9JBD0 128 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SGK494L7N484 410 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 RNASET2O00584 256 aaKnown RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 SCAMP2O15127 329 aaKnown RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 KDELR3O43731 214 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 NME6O75414 186 aaPredicted RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 TSPAN12O95859 305 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ADH1CP00326 375 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ITGA5P08648 1049 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ZNF10P21506 573 aaPredicted RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 FGF9P31371 208 aaPredicted RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 MC4RP32245 332 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 MTPNP58546 118 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 MRPS6P82932 125 aaKnown RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 HNRNPA0Q13151 305 aaKnown RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 PTCHD3Q3KNS1 767 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 LETMD1Q6P1Q0 360 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 FAM181AQ8N9Y4 354 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ZDHHC1Q8WTX9 485 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 MBOAT4Q96T53 435 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ADAM18Q9Y3Q7 739 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms