RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 C2orf27AQ580R0 203 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 CBLL1Q75N03 491 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 C6orf120Q7Z4R8 191 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 ZNF563Q8TA94 476 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 THAP6Q8TBB0 222 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 SLC7A6Q92536 515 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 RGMAQ96B86 450 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 MED30Q96HR3 178 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 RIPOR3Q96MK2 946 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 EPYCQ99645 322 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 TMEM185BQ9H7F4 350 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 TMEM45AQ9NWC5 275 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 CCL26Q9Y258 94 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 GRXCR1A8MXD5 290 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 SCAMP2O15127 329 aaKnown RBP14.58□□□□□ -0.08
SHH-201ENST00000297261 CD3GP09693 182 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 RPS5P46782 204 aaKnown RBP14.58□□□□□ -0.08
SHH-201ENST00000297261 VSX2P58304 361 aaPredicted RBP14.58□□□□□ -0.08
SHH-201ENST00000297261 GRK1Q15835 563 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 OR2G6Q5TZ20 316 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 TMEM207Q6UWW9 146 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 ARSKQ6UWY0 536 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 ENTHD1Q8IYW4 607 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 CPXM2Q8N436 756 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 TMIEQ8NEW7 156 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 GPR150Q8NGU9 434 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 CASTOR1Q8WTX7 329 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 NEDD4LQ96PU5 975 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 LGR4Q9BXB1 951 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 LHX3Q9UBR4 397 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 PLAGL1Q9UM63 463 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 PCDHGB1Q9Y5G3 927 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 MCIDASD6RGH6 385 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 XKRYO14609 159 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 PRKYO43930 277 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 UQCRC2P22695 453 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 ACRV1P26436 265 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 ARNTP27540 789 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 PON3Q15166 354 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 SF3A2Q15428 464 aaKnown RBP14.58□□□□□ -0.08
SHH-201ENST00000297261 RPS26P11Q5JNZ5 115 aaPredicted RBP14.58□□□□□ -0.08
SHH-201ENST00000297261 PXDC1Q5TGL8 231 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 OR52N2Q8NGI0 321 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 WFDC5Q8TCV5 224 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 SLC5A11Q8WWX8 675 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 HAVCR1Q96D42 359 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 NUS1Q96E22 293 aa14.58□□□□□ -0.08
SHH-201ENST00000297261 TTC3P53804 2025 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 OR6C74A6NCV1 312 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 MROH6A6NGR9 719 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 POM121CA8CG34 1229 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 WASHC1A8K0Z3 465 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 F5H0A9 414 aaPredicted RBP14.57□□□□□ -0.08
SHH-201ENST00000297261 CREBL2O60519 120 aaPredicted RBP14.57□□□□□ -0.08
SHH-201ENST00000297261 MMP20O60882 483 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 ZNF821O75541 412 aaPredicted RBP14.57□□□□□ -0.08
SHH-201ENST00000297261 HLA-FP30511 346 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 DNASE1L1P49184 302 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 DYNC2LI1Q8TCX1 351 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 RHNO1Q9BSD3 238 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 CLMPQ9H6B4 373 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 STOX2Q9P2F5 926 aaPredicted RBP14.57□□□□□ -0.08
SHH-201ENST00000297261 NPIPB15A6NHN6 443 aaPredicted RBP14.57□□□□□ -0.08
SHH-201ENST00000297261 DUXAA6NLW8 204 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 GFRA2O00451 464 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 ALDOBP05062 364 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 CEBPBP17676 345 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 HOXD11P31277 338 aaPredicted RBP14.57□□□□□ -0.08
SHH-201ENST00000297261 RBM34P42696 430 aaKnown RBP14.57□□□□□ -0.08
SHH-201ENST00000297261 MPP7Q5T2T1 576 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 FAM198BQ6UWH4 519 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 UBQLNLQ8IYU4 475 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 SYT14Q8NB59 555 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 FCAMRQ8WWV6 532 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 CFHR5Q9BXR6 569 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 TRIM2Q9C040 744 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.57□□□□□ -0.08
SHH-201ENST00000297261 C5AR2Q9P296 337 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 DNMT3BQ9UBC3 853 aaKnown RBP14.57□□□□□ -0.08
SHH-201ENST00000297261 J3KTA2 159 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 POP7O75817 140 aaKnown RBP14.57□□□□□ -0.08
SHH-201ENST00000297261 PDGFAP04085 211 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 SBK3P0C264 359 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 AFMIDQ63HM1 303 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 CRTC1Q6UUV9 634 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 VITQ6UXI7 678 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 RFPL4BQ6ZWI9 263 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 AMZ2Q86W34 360 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 CCDC116Q8IYX3 515 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 GPER1Q99527 375 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 THAP7Q9BT49 309 aaPredicted RBP14.57□□□□□ -0.08
SHH-201ENST00000297261 ACTR6Q9GZN1 396 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 IL26Q9NPH9 171 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 FBXO8Q9NRD0 319 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 POT1Q9NUX5 634 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 FARSAQ9Y285 508 aaKnown RBP14.57□□□□□ -0.08
SHH-201ENST00000297261 SLC27A6Q9Y2P4 619 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 PCDHGB7Q9Y5F8 929 aa14.57□□□□□ -0.08
SHH-201ENST00000297261 EDDM13A0A1B0GTR0 161 aa14.56□□□□□ -0.08
SHH-201ENST00000297261 A0A1B0GVT2 93 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms