RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 OPN5Q6U736 354 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 IL20RBQ6UXL0 311 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 NPSR1Q6W5P4 371 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 RNF111Q6ZNA4 994 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 MAVSQ7Z434 540 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 CAMKMTQ7Z624 323 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 LRRC34Q8IZ02 419 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 SAMD14Q8IZD0 417 aaPredicted RBP8.43□□□□□ -1.06
HMGN1-201ENST00000288344 CYP4Z2PQ8N1L4 340 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 OR2L13Q8N349 312 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 LRRC25Q8N386 305 aaPredicted RBP8.43□□□□□ -1.06
HMGN1-201ENST00000288344 VWA5B2Q8N398 1253 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 CPSF7Q8N684 471 aaKnown RBP8.43□□□□□ -1.06
HMGN1-201ENST00000288344 PSD4Q8NDX1 1056 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 OR9A2Q8NGT5 310 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 HGDQ93099 445 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 EXOSC8Q96B26 276 aaKnown RBP8.43□□□□□ -1.06
HMGN1-201ENST00000288344 KLHL29Q96CT2 875 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 MTERF3Q96E29 417 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 ELP4Q96EB1 424 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 GIMAP5Q96F15 307 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 MAELQ96JY0 434 aaKnown RBP8.43□□□□□ -1.06
HMGN1-201ENST00000288344 BTBD9Q96Q07 612 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 CNPPD1Q9BV87 410 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 NXF5Q9H1B4 397 aaKnown RBP8.43□□□□□ -1.06
HMGN1-201ENST00000288344 REEP4Q9H6H4 257 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 AKTIPQ9H8T0 292 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 ZDHHC11Q9H8X9 412 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 NEUROD4Q9HD90 331 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 KLHL1Q9NR64 748 aa8.43□□□□□ -1.06
HMGN1-201ENST00000288344 C19orf53Q9UNZ5 99 aaPredicted RBP8.43□□□□□ -1.06
HMGN1-201ENST00000288344 NCOA6Q14686 2063 aaPredicted RBP8.43□□□□□ -1.06
HMGN1-201ENST00000288344 DCHS2Q6V1P9 2916 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 ANKUB1A6NFN9 424 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 TSPAN2O60636 221 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 PEX11AO75192 247 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 TRIM3O75382 744 aaPredicted RBP8.42□□□□□ -1.06
HMGN1-201ENST00000288344 ABCB1P08183 1280 aaPredicted RBP8.42□□□□□ -1.06
HMGN1-201ENST00000288344 NT5EP21589 574 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 ABCD3P28288 659 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 MPIP34949 423 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 ALDH9A1P49189 494 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 WNT3P56703 355 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 OC90Q02509 493 aaPredicted RBP8.42□□□□□ -1.06
HMGN1-201ENST00000288344 STX3Q13277 289 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 MAPKAPK3Q16644 382 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 IMPG1Q17R60 797 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 KRTCAP3Q53RY4 240 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 CMPK2Q5EBM0 449 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 OGFOD2Q6N063 350 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 TMEM64Q6YI46 380 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 BNC2Q6ZN30 1099 aaPredicted RBP8.42□□□□□ -1.06
HMGN1-201ENST00000288344 RTL4Q6ZR62 310 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 TMEM156Q8N614 296 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 HORMAD2Q8N7B1 307 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 TMEM178AQ8NBL3 297 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 OR2M7Q8NG81 312 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 OR52R1Q8NGF1 315 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 RAB3IL1Q8TBN0 382 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 AGR3Q8TD06 166 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 KAT2AQ92830 837 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 RELTQ969Z4 430 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 SPACA9Q96E40 222 aaPredicted RBP8.42□□□□□ -1.06
HMGN1-201ENST00000288344 PPP3R2Q96LZ3 170 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 GPR137Q96N19 417 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 SECISBP2Q96T21 854 aaKnown RBP8.42□□□□□ -1.06
HMGN1-201ENST00000288344 MEAF6Q9HAF1 191 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 KCNK9Q9NPC2 374 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 AGPAT4Q9NRZ5 378 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 SIRT3Q9NTG7 399 aaPredicted RBP8.42□□□□□ -1.06
HMGN1-201ENST00000288344 ACSS1Q9NUB1 689 aaPredicted RBP8.42□□□□□ -1.06
HMGN1-201ENST00000288344 OLAHQ9NV23 265 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.42□□□□□ -1.06
HMGN1-201ENST00000288344 THAP1Q9NVV9 213 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 COPS7AQ9UBW8 275 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 ERRFI1Q9UJM3 462 aaPredicted RBP8.42□□□□□ -1.06
HMGN1-201ENST00000288344 NPFFR2Q9Y5X5 522 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 ZNF780BQ9Y6R6 833 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 MED12Q93074 2177 aa8.42□□□□□ -1.06
HMGN1-201ENST00000288344 ITPR2Q14571 2701 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 A0A1B0GVC2 190 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 SLC35F4A4IF30 521 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 LRRC3CA6NJW4 275 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 A8MVJ9 347 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 SDHDO14521 159 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 ASNA1O43681 348 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 VPS4BO75351 444 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 SLITRK5O94991 958 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 LDLRP01130 860 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 IGHG3P01860 377 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 CRYABP02511 175 aaKnown RBP8.41□□□□□ -1.06
HMGN1-201ENST00000288344 LAMP1P11279 417 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 G6PDP11413 515 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 ZFP36L2P47974 494 aaKnown RBP8.41□□□□□ -1.06
HMGN1-201ENST00000288344 MEOX1P50221 254 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 GAS1P54826 345 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 DIO3P55073 304 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 CLDN8P56748 225 aa8.41□□□□□ -1.06
HMGN1-201ENST00000288344 RPL38P63173 70 aaKnown RBP8.41□□□□□ -1.06
HMGN1-201ENST00000288344 PTGR1Q14914 329 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms