RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 DUSP8Q13202 625 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 RNF220Q5VTB9 566 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 SVOPLQ8N434 492 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 TSLPQ969D9 159 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 PTCHD1Q96NR3 888 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 FEVQ99581 238 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 RBM4BQ9BQ04 359 aaKnown RBP15.4■□□□□ 0.06
USP4-201ENST00000265560 RBM4Q9BWF3 364 aaKnown RBP15.4■□□□□ 0.06
USP4-201ENST00000265560 ZFHX2Q9C0A1 2572 aaPredicted RBP15.4■□□□□ 0.06
USP4-201ENST00000265560 DNAAF2Q9NVR5 837 aaKnown RBP15.4■□□□□ 0.06
USP4-201ENST00000265560 ZSCAN32Q9NX65 697 aa15.4■□□□□ 0.06
USP4-201ENST00000265560 H0YJX3 145 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 TIAF1O95411 115 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 ATP1B1P05026 303 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 SP9P0CG40 484 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 GABRA3P34903 492 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 ARHGDIAP52565 204 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 EFNA3P52797 238 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 TXNL4AP83876 142 aaKnown RBP15.39■□□□□ 0.05
USP4-201ENST00000265560 FAM53BQ14153 422 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 ANGPT1Q15389 498 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 FAM214AQ32MH5 1076 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 FGD3Q5JSP0 725 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 TCTE1Q5JU00 501 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 NLGN4XQ8N0W4 816 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 SLC5A8Q8N695 610 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 SLC38A9Q8NBW4 561 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 RIT1Q92963 219 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 UBE2FQ969M7 185 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 ZNF285Q96NJ3 590 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 FAM118AQ9NWS6 357 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 CLDN16Q9Y5I7 305 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 H3BMH7 237 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 SERPINB7O75635 380 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 KCNJ5P48544 419 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 ATAD3BQ5T9A4 648 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 FHL5Q5TD97 284 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 TCTN3Q6NUS6 607 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 ZAR1Q86SH2 424 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 HIPK1Q86Z02 1210 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 VWA5B2Q8N398 1253 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 CLIP4Q8N3C7 705 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 OR6T1Q8NGN1 323 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 GTPBP3Q969Y2 492 aaKnown RBP15.39■□□□□ 0.05
USP4-201ENST00000265560 DUSP23Q9BVJ7 150 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 RAB33BQ9H082 229 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 PNO1Q9NRX1 252 aaKnown RBP15.39■□□□□ 0.05
USP4-201ENST00000265560 GPC6Q9Y625 555 aaPredicted RBP15.39■□□□□ 0.05
USP4-201ENST00000265560 ARHGAP33O14559 1287 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 CBX7O95931 251 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 TNNI3P19429 210 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 FPR1P21462 350 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 ADARB1P78563 741 aaKnown RBP15.39■□□□□ 0.05
USP4-201ENST00000265560 PHF19Q5T6S3 580 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 PIWIL3Q7Z3Z3 882 aaKnown RBP15.39■□□□□ 0.05
USP4-201ENST00000265560 D2HGDHQ8N465 521 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 ZNF321PQ8N8H1 164 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 CTRCQ99895 268 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 APMAPQ9HDC9 416 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 ACER3Q9NUN7 267 aa15.39■□□□□ 0.05
USP4-201ENST00000265560 C19orf53Q9UNZ5 99 aaPredicted RBP15.39■□□□□ 0.05
USP4-201ENST00000265560 TRBV4-1A0A0J9YWV2 114 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 IL7RP16871 459 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 ZNF311Q5JNZ3 666 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 FAM69BQ5VUD6 431 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 APOBEC4Q8WW27 367 aaKnown RBP15.38■□□□□ 0.05
USP4-201ENST00000265560 OR6C1Q96RD1 312 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 CD180Q99467 661 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 NIPSNAP1Q9BPW8 284 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 NPLQ9BXD5 320 aaPredicted RBP15.38■□□□□ 0.05
USP4-201ENST00000265560 CXorf21Q9HAI6 301 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 ERVK-19Q9WJR5 959 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 PCDHGB3Q9Y5G1 929 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 TPD52P55327 224 aaPredicted RBP15.38■□□□□ 0.05
USP4-201ENST00000265560 ZNF155Q12901 538 aaPredicted RBP15.38■□□□□ 0.05
USP4-201ENST00000265560 ARHGAP22Q7Z5H3 698 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 KRT73Q86Y46 540 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 GALNT12Q8IXK2 581 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 SAMD14Q8IZD0 417 aaPredicted RBP15.38■□□□□ 0.05
USP4-201ENST00000265560 LGI4Q8N135 537 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 ZNF614Q8N883 585 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 IFI44Q8TCB0 444 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 SGCDQ92629 289 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 ZC3H10Q96K80 434 aaKnown RBP15.38■□□□□ 0.05
USP4-201ENST00000265560 NDC1Q9BTX1 674 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 SLC7A5P2Q9GIP4 190 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 CHST2Q9Y4C5 530 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 ENPP4Q9Y6X5 453 aa15.38■□□□□ 0.05
USP4-201ENST00000265560 PEX12O00623 359 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 CLDN4O14493 209 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 GADD45GO95257 159 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 CPNE6O95741 557 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 SLC35E2P0CK97 266 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 MAPK14Q16539 360 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 CDC73Q6P1J9 531 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 TMEM71Q6P5X7 295 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 TTC33Q6PID6 262 aaPredicted RBP15.37■□□□□ 0.05
USP4-201ENST00000265560 B3GNT8Q7Z7M8 397 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 COX18Q8N8Q8 333 aa15.37■□□□□ 0.05
USP4-201ENST00000265560 MOAP1Q96BY2 351 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms