RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 P2RX3P56373 397 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 WNT4P56705 351 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 ERVFC1P60507 584 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 GPR50Q13585 617 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 ARHGEF6Q15052 776 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 KLHL22Q53GT1 634 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 SDE2Q6IQ49 451 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 CNIH2Q6PI25 160 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 LYPD8Q6UX82 237 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 C12orf40Q86WS4 652 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 GRAMD2AQ8IUY3 354 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 SFTPA1Q8IWL2 248 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 OR8D1Q8WZ84 308 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 ST6GAL2Q96JF0 529 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 MRGPRX3Q96LB0 322 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 TTTY10Q9BZA0 68 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 GLIPR2Q9H4G4 154 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 TRIM45Q9H8W5 580 aaPredicted RBP11.93□□□□□ -0.5
LIG1-201ENST00000263274 KLHL1Q9NR64 748 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 GRIP1Q9Y3R0 1128 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 PCDHGB2Q9Y5G2 931 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 SCN2AQ99250 2005 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 LOC102723532A0A0G2JNH3 316 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 LOC105371267A0A1B0GV96 52 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 A0A1W2PS29 197 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 UBL4AP11441 157 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 MAPK9P45984 424 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 LIMS1P48059 325 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 SNRPGP62308 76 aaKnown RBP11.92□□□□□ -0.5
LIG1-201ENST00000263274 CSTF1Q05048 431 aaKnown RBP11.92□□□□□ -0.5
LIG1-201ENST00000263274 P2RY14Q15391 338 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 IDNKQ5T6J7 187 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 SAXO2Q658L1 398 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 SLC27A4Q6P1M0 643 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 HSDL2Q6YN16 418 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 FAM92BQ6ZTR7 304 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 C16orf62Q7Z3J2 963 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 VRK2Q86Y07 508 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 DCUN1D3Q8IWE4 304 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 TM9SF4Q92544 642 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 NXPE3Q969Y0 559 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 TAPBPLQ9BX59 468 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 ENTPD4Q9Y227 616 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 ARID1BQ8NFD5 2236 aaPredicted RBP11.92□□□□□ -0.5
LIG1-201ENST00000263274 F5P12259 2224 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 A0A1W2PQ72 361 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 PCP4L1A6NKN8 68 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 ISM1B1AKI9 464 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 SDHBP21912 280 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 KRT74Q7RTS7 529 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 FAM129CQ86XR2 697 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 TRIM63Q969Q1 353 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 MS4A8Q9BY19 250 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 C12orf4Q9NQ89 552 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 NDRG2Q9UN36 371 aaKnown RBP11.92□□□□□ -0.5
LIG1-201ENST00000263274 A4GNTQ9UNA3 340 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 KCNE3Q9Y6H6 103 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 AP1M2Q9Y6Q5 423 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 PLXND1Q9Y4D7 1925 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 PGRMC2O15173 223 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 GNSP15586 552 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 PPM1AP35813 382 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 PXNP49023 591 aaPredicted RBP11.92□□□□□ -0.5
LIG1-201ENST00000263274 RGS8P57771 180 aaPredicted RBP11.92□□□□□ -0.5
LIG1-201ENST00000263274 MRPL28Q13084 256 aaKnown RBP11.92□□□□□ -0.5
LIG1-201ENST00000263274 ELOAQ14241 798 aaKnown RBP11.92□□□□□ -0.5
LIG1-201ENST00000263274 WSCD2Q2TBF2 565 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 PIP5KL1Q5T9C9 394 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 KLBQ86Z14 1044 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 ZNF614Q8N883 585 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 TMEM145Q8NBT3 493 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 SLAIN1Q8ND83 568 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 OR51G2Q8NGK0 314 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 NEIL3Q8TAT5 605 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 CREB3L4Q8TEY5 395 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 RASSF5Q8WWW0 418 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 LGR4Q9BXB1 951 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 MIXL1Q9H2W2 232 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 KLHL31Q9H511 634 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 RNF121Q9H920 327 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 NDUFB11Q9NX14 153 aa11.92□□□□□ -0.5
LIG1-201ENST00000263274 PRUNE2Q8WUY3 3088 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 SDK1Q7Z5N4 2213 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 PRAMEF27A3QJZ7 478 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 PRRT4C9JH25 899 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 YES1P07947 543 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 BSGP35613 385 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 ETV6P41212 452 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 KIR2DL3P43628 341 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 FABP5Q01469 135 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 PLEKHM3Q6ZWE6 761 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 IKBIPQ70UQ0 350 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 PRICKLE2Q7Z3G6 844 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 ZNF438Q7Z4V0 828 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 NOXA1Q86UR1 476 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 CCDC28AQ8IWP9 274 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 SLC25A46Q96AG3 418 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 SECISBP2Q96T21 854 aaKnown RBP11.91□□□□□ -0.5
LIG1-201ENST00000263274 KATNB1Q9BVA0 655 aa11.91□□□□□ -0.5
LIG1-201ENST00000263274 SERHL2Q9H4I8 314 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms