RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 SAMD11Q96NU1 681 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 POLR1EQ9GZS1 481 aaKnown RBP13.87□□□□□ -0.19
PTPRA-201ENST00000216877 NTMQ9P121 344 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 H3BRB1 525 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 PRKYO43930 277 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 KHDRBS3O75525 346 aaKnown RBP13.87□□□□□ -0.19
PTPRA-201ENST00000216877 ARIH2O95376 493 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 CRYBA1P05813 215 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 PRPS2P11908 318 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 CPTPQ5TA50 214 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 PGBD2Q6P3X8 592 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 IKBIPQ70UQ0 350 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 TMUB2Q71RG4 321 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 TSPAN33Q86UF1 283 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 TMEM17Q86X19 198 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 PDXPQ96GD0 296 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 TREM1Q9NP99 234 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 MYEF2Q9P2K5 600 aaKnown RBP13.87□□□□□ -0.19
PTPRA-201ENST00000216877 AP1M2Q9Y6Q5 423 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 SCN4AP35499 1836 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 C7orf66A4D0T2 115 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 SEC14L5O43304 696 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 ZNF3P17036 446 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 FPR3P25089 353 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 SEC23BQ15437 767 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 FAAP20Q6NZ36 180 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 TRIM40Q6P9F5 258 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 ARL9Q6T311 187 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 PAQR9Q6ZVX9 377 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 LRRC52Q8N7C0 313 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 ZSCAN1Q8NBB4 408 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 PXT1Q8NFP0 134 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 MRPL48Q96GC5 212 aaKnown RBP13.87□□□□□ -0.19
PTPRA-201ENST00000216877 ATG10Q9H0Y0 220 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 POPDC3Q9HBV1 291 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 NMRK2Q9NPI5 230 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 MAFFQ9ULX9 164 aa13.87□□□□□ -0.19
PTPRA-201ENST00000216877 LSM2Q9Y333 95 aaKnown RBP13.87□□□□□ -0.19
PTPRA-201ENST00000216877 ZNF638Q14966 1978 aaKnown RBP13.87□□□□□ -0.19
PTPRA-201ENST00000216877 ZAR1LA6NP61 321 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 ZNF705EA8MWA4 302 aaPredicted RBP13.86□□□□□ -0.19
PTPRA-201ENST00000216877 FGF1P05230 155 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 OR10A3P58181 314 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 DEFA6Q01524 100 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 LRRC37A5PQ49AS3 106 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 COX20Q5RI15 118 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 AVPI1Q5T686 147 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 NOXRED1Q6NXP6 359 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 RELTQ969Z4 430 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 TRIM43Q96BQ3 446 aaPredicted RBP13.86□□□□□ -0.19
PTPRA-201ENST00000216877 FCRL4Q96PJ5 515 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 KCNJ15Q99712 375 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 SEMA4CQ9C0C4 833 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 RNF39Q9H2S5 420 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 WDR26Q9H7D7 661 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 TXNRD2Q9NNW7 524 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 ACER3Q9NUN7 267 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 TMEM45AQ9NWC5 275 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 ELOVL2Q9NXB9 296 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 DOCK5Q9H7D0 1870 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 CD63P08962 238 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 SHC1P29353 583 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 ZNF280AP59817 542 aaPredicted RBP13.86□□□□□ -0.19
PTPRA-201ENST00000216877 ZNF124Q15973 351 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 PABPC1L2AQ5JQF8 200 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 OR4F15Q8NGB8 312 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 GPR150Q8NGU9 434 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 TRMT10AQ8TBZ6 339 aaKnown RBP13.86□□□□□ -0.19
PTPRA-201ENST00000216877 ADAMTS19Q8TE59 1207 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 ZNF334Q9HCZ1 680 aaPredicted RBP13.86□□□□□ -0.19
PTPRA-201ENST00000216877 SHISA3A0PJX4 238 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 OR6C68A6NDL8 312 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 FGF10O15520 208 aaPredicted RBP13.86□□□□□ -0.19
PTPRA-201ENST00000216877 NME6O75414 186 aaPredicted RBP13.86□□□□□ -0.19
PTPRA-201ENST00000216877 SLC25A14O95258 325 aaPredicted RBP13.86□□□□□ -0.19
PTPRA-201ENST00000216877 FGF2P09038 288 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 SULT1A3P0DMM9 295 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 SULT1A4P0DMN0 295 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 CPEP16870 476 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 PTGFRP43088 359 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 MRPL19P49406 292 aaKnown RBP13.86□□□□□ -0.19
PTPRA-201ENST00000216877 TTPAP49638 278 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 PDZK1IP1Q13113 114 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 RGNQ15493 299 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 RAB12Q6IQ22 244 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 DDX53Q86TM3 631 aaKnown RBP13.86□□□□□ -0.19
PTPRA-201ENST00000216877 CCDC117Q8IWD4 279 aaPredicted RBP13.86□□□□□ -0.19
PTPRA-201ENST00000216877 OR5J2Q8NH18 312 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 PHOSPHO1Q8TCT1 267 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 TBC1D20Q96BZ9 403 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 TCEAL4Q96EI5 215 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 KLHL31Q9H511 634 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 TRPS1Q9UHF7 1281 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 ASF1AQ9Y294 204 aa13.86□□□□□ -0.19
PTPRA-201ENST00000216877 SMIM28A0A1B0GU29 152 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 AKR7A3O95154 331 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 FARS2O95363 451 aaKnown RBP13.85□□□□□ -0.19
PTPRA-201ENST00000216877 EBLN1P0CF75 366 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 RPL17P18621 184 aaKnown RBP13.85□□□□□ -0.19
PTPRA-201ENST00000216877 ACHEP22303 614 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms