RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ACSS1Q9NUB1 689 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SLC27A5Q9Y2P5 690 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 IGLV3-22A0A075B6J6 115 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 A0A0A6YYH2 397 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 LRP5LA4QPB2 252 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 A6NJ64 397 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ONECUT3O60422 494 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 FGF19O95750 216 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OR1G1P47890 313 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 MECP2P51608 486 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 BACE1P56817 501 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 EXOSC2Q13868 293 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 C9orf64Q5T6V5 341 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 MFSD14CQ5VZR4 134 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 RBMS3Q6XE24 437 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SLC35D2Q76EJ3 337 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 KDM8Q8N371 416 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 NETO1Q8TDF5 533 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ACP6Q9NPH0 428 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 KCNIP2Q9NS61 270 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 THSD1Q9NS62 852 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 LAMP5Q9UJQ1 280 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 MAP4K5Q9Y4K4 846 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 C17orf102A2RUQ5 167 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 HSPB2A8KAH6 182 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF736B4DX44 427 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SLC16A8O95907 504 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 BDKRB2P30411 391 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 TNK1Q13470 666 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 HSPB2Q16082 182 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ADPRMQ3LIE5 342 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SPANXN4Q5MJ08 99 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 USP51Q70EK9 711 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 TMED4Q7Z7H5 227 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CACUL1Q86Y37 369 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SCMH1Q96GD3 660 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 LRR1Q96L50 414 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 UBQLN3Q9H347 655 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 EVLQ9UI08 416 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 PCDHB10Q9UN67 800 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 HEBP2Q9Y5Z4 205 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF98A6NK75 572 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 RAB3DO95716 219 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 HERV-K104P61576 105 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SPP2Q13103 211 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CDHR3Q6ZTQ4 885 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CBLL1Q75N03 491 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OVCH2Q7RTZ1 564 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 NUP54Q7Z3B4 507 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ARHGAP12Q8IWW6 846 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 IL17RDQ8NFM7 739 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF649Q9BS31 505 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SRRQ9GZT4 340 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 PIH1D1Q9NWS0 290 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CHRNA9Q9UGM1 479 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 WASF3Q9UPY6 502 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 XRN1Q8IZH2 1706 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CHD1O14646 1710 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM131LA2VDJ0 1609 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 C13orf42A0A1B0GVH6 325 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SLC22A23A1A5C7 686 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 UBFD1O14562 309 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF623O75123 536 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 RAB5AP20339 215 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CTNNB1P35222 781 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 RHBDL3P58872 404 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CBFBQ13951 182 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SCGB2B2Q4G0G5 96 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 DALRD3Q5D0E6 543 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ANKRD16Q6P6B7 361 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM173Q86WV6 379 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 MRPL41Q8IXM3 137 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 FAM86B1Q8N7N1 296 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 IL17RCQ8NAC3 791 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OR6M1Q8NGM8 313 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OR56A3Q8NH54 315 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 RAET1EQ8TD07 263 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 FCRL2Q96LA5 508 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 PITX2Q99697 317 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 FDXACB1Q9BRP7 624 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OCEL1Q9H607 264 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 PTPRHQ9HD43 1115 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 DCAF16Q9NXF7 216 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 TIAM2Q8IVF5 1701 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 DPEP1P16444 411 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 NDUFV1P49821 464 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ARF3P61204 181 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 POU6F2P78424 691 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ARF1P84077 181 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 NRG1Q02297 640 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 FOXO1Q12778 655 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 MPPE1Q53F39 396 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 PLEKHS1Q5SXH7 462 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 TANGO2Q6ICL3 276 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OR6F1Q8NGZ6 308 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OARD1Q9Y530 152 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 PCDHAC2Q9Y5I4 1007 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 MON2Q7Z3U7 1717 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms