RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 EPN1Q9Y6I3 576 aaPredicted RBP13.05□□□□□ -0.32
CLN3-249ENST00000636685 PCNX3Q9H6A9 2034 aa13.05□□□□□ -0.32
CLN3-249ENST00000636685 A0A1W2PS29 197 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 GLOD5A6NK44 160 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 GPR75O95800 540 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 CT62P0C5K7 136 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 CD22P20273 847 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 KCNJ1P48048 391 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 VPS41P49754 854 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 NUDT6P53370 316 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 HNRNPH2P55795 449 aaKnown RBP13.04□□□□□ -0.32
CLN3-249ENST00000636685 B3GALT5-AS1P59052 145 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 TRIP13Q15645 432 aaPredicted RBP13.04□□□□□ -0.32
CLN3-249ENST00000636685 BCL2A1Q16548 175 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 ZNF672Q499Z4 452 aaPredicted RBP13.04□□□□□ -0.32
CLN3-249ENST00000636685 PDLIM3Q53GG5 364 aaPredicted RBP13.04□□□□□ -0.32
CLN3-249ENST00000636685 TMEM81Q6P7N7 255 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 CLEC2AQ6UVW9 174 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 NUP54Q7Z3B4 507 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 GPR180Q86V85 440 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 PLCZ1Q86YW0 608 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 SYCE1Q8N0S2 351 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 ZNF615Q8N8J6 731 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 C11orf24Q96F05 449 aaPredicted RBP13.04□□□□□ -0.32
CLN3-249ENST00000636685 PINK1Q9BXM7 581 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 C12orf65Q9H3J6 166 aaKnown RBP13.04□□□□□ -0.32
CLN3-249ENST00000636685 ALG2Q9H553 416 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 MANSC1Q9H8J5 431 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 PRM3Q9NNZ6 103 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 EHD3Q9NZN3 535 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 DKKL1Q9UK85 242 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 PLCE1Q9P212 2302 aa13.04□□□□□ -0.32
CLN3-249ENST00000636685 PRAMEF25A6NGN4 478 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 ELOA3DA6NLF2 546 aaPredicted RBP13.03□□□□□ -0.32
CLN3-249ENST00000636685 GOLGA8MH3BSY2 632 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 CLGNO14967 610 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 ZIC3O60481 467 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 TGFB1P01137 390 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 AHSGP02765 367 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 CD3EP07766 207 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 CCDC175P0C221 793 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 ITGA2P17301 1181 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 PTNP21246 168 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 SUCLG1P53597 346 aaKnown RBP13.03□□□□□ -0.32
CLN3-249ENST00000636685 SNTA1Q13424 505 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 DOC2AQ14183 400 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 CCNG2Q16589 344 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 CTU2Q2VPK5 515 aaKnown RBP13.03□□□□□ -0.32
CLN3-249ENST00000636685 ELOA3BQ3SY89 546 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 NCMAPQ5T1S8 102 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 FAM214BQ7L5A3 538 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 ATG4DQ86TL0 474 aaPredicted RBP13.03□□□□□ -0.32
CLN3-249ENST00000636685 KBTBD8Q8NFY9 601 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 ELOA3Q8NG57 546 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 ANKRD7Q92527 254 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 PDLIM5Q96HC4 596 aaKnown RBP13.03□□□□□ -0.32
CLN3-249ENST00000636685 TACO1Q9BSH4 297 aaKnown RBP13.03□□□□□ -0.32
CLN3-249ENST00000636685 OR10A5Q9H207 317 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 CXorf21Q9HAI6 301 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 MOCS1Q9NZB8 636 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 SLC17A6Q9P2U8 582 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 KCNS2Q9ULS6 477 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 B3GALT5Q9Y2C3 310 aa13.03□□□□□ -0.32
CLN3-249ENST00000636685 TRRAPQ9Y4A5 3859 aa13.02□□□□□ -0.32
CLN3-249ENST00000636685 TCF21O43680 179 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 UGT2B11O75310 529 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 TNFRSF21O75509 655 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 AIFM1O95831 613 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 PEPDP12955 493 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 GPX3P22352 226 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 TLX1P31314 330 aaPredicted RBP13.02□□□□□ -0.33
CLN3-249ENST00000636685 GALNSP34059 522 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 MAGEA6P43360 314 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 HNMTP50135 292 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 NEK2P51955 445 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 CDKL1Q00532 357 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 KIF5AQ12840 1032 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 SQLEQ14534 574 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 PON3Q15166 354 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 NRF1Q16656 503 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 FBXO48Q5FWF7 155 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 OR5M10Q6IEU7 315 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 OR4C11Q6IEV9 310 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 SGMS2Q8NHU3 365 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 ZNF473Q8WTR7 871 aaKnown RBP13.02□□□□□ -0.33
CLN3-249ENST00000636685 OMA1Q96E52 524 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 EHD1Q9H4M9 534 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 PLSCR4Q9NRQ2 329 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 MS4A12Q9NXJ0 267 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 GPRC5BQ9NZH0 403 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 PHF11Q9UIL8 331 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 CLEC4AQ9UMR7 237 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 OARD1Q9Y530 152 aa13.02□□□□□ -0.33
CLN3-249ENST00000636685 UQCRHLA0A096LP55 91 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 NCF1BA6NI72 391 aaPredicted RBP13.01□□□□□ -0.33
CLN3-249ENST00000636685 NCF1CA8MVU1 366 aaPredicted RBP13.01□□□□□ -0.33
CLN3-249ENST00000636685 B4DXG7 233 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 SEC14L5O43304 696 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 AQP8O94778 261 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 SLC35E2BP0CK96 405 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms