RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 FUT7Q11130 342 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 TUBA3CQ13748 450 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 EBPQ15125 230 aaKnown RBP16.47■□□□□ 0.23
CLN3-247ENST00000636351 CEBPEQ15744 281 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 CPTPQ5TA50 214 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 OGFOD2Q6N063 350 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 TUBA3EQ6PEY2 450 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 TMEM107Q6UX40 140 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 SPATA19Q7Z5L4 167 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 OR52R1Q8NGF1 315 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 ITLN2Q8WWU7 325 aaPredicted RBP16.47■□□□□ 0.23
CLN3-247ENST00000636351 ASB15Q8WXK1 588 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 MAGED4Q96JG8 741 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 MARK4Q96L34 752 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 AMDHD1Q96NU7 426 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 WWTR1Q9GZV5 400 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 GLIPR2Q9H4G4 154 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 MYOTQ9UBF9 498 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 ATP6V1HQ9UI12 483 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 MAPRE3Q9UPY8 281 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 YARS2Q9Y2Z4 477 aaKnown RBP16.47■□□□□ 0.23
CLN3-247ENST00000636351 TRGV8A0A0C4DH27 118 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 C2orf92A0A1B0GVN3 265 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 POLR3GO15318 223 aaPredicted RBP16.46■□□□□ 0.23
CLN3-247ENST00000636351 TBX19O60806 448 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 ALDOCP09972 364 aaKnown RBP16.46■□□□□ 0.23
CLN3-247ENST00000636351 MC3RP41968 323 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 MANFP55145 182 aaKnown RBP16.46■□□□□ 0.23
CLN3-247ENST00000636351 NME5P56597 212 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 MGAT2Q10469 447 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 RPS6KA2Q15349 733 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 OR1C1Q15619 314 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 PGS1Q32NB8 556 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 TRMT12Q53H54 448 aaKnown RBP16.46■□□□□ 0.23
CLN3-247ENST00000636351 SZRD1Q7Z422 152 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 HORMAD2Q8N7B1 307 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 NUBPLQ8TB37 319 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 SLC22A8Q8TCC7 542 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 ACTRT2Q8TDY3 377 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 THOC1Q96FV9 657 aaKnown RBP16.46■□□□□ 0.23
CLN3-247ENST00000636351 PHF12Q96QT6 1004 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 OR52B2Q96RD2 323 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 DDX18Q9NVP1 670 aaKnown RBP16.46■□□□□ 0.23
CLN3-247ENST00000636351 AIG1Q9NVV5 245 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 SUCOQ9UBS9 1254 aaKnown RBP16.46■□□□□ 0.23
CLN3-247ENST00000636351 CFL2Q9Y281 166 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 SVILO95425 2214 aa16.46■□□□□ 0.23
CLN3-247ENST00000636351 APCP25054 2843 aa16.46■□□□□ 0.22
CLN3-247ENST00000636351 OTOGQ6ZRI0 2925 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 TMEM200CA6NKL6 621 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 A8MVJ9 347 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 COQ9O75208 318 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 BCAS2O75934 225 aaPredicted RBP16.45■□□□□ 0.22
CLN3-247ENST00000636351 RASAL1O95294 804 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 TGDSO95455 350 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 CBX7O95931 251 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 LAMP1P11279 417 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 MST1P26927 711 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 CD96P40200 585 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 CYB561P49447 251 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 HLCSP50747 726 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 AQP5P55064 265 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 CLDN8P56748 225 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 GUCY1A3Q02108 690 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 ZNF155Q12901 538 aaPredicted RBP16.45■□□□□ 0.22
CLN3-247ENST00000636351 ART3Q13508 389 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 ZNF551Q7Z340 670 aaPredicted RBP16.45■□□□□ 0.22
CLN3-247ENST00000636351 CYP4Z2PQ8N1L4 340 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 ARMC10Q8N2F6 343 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 ZNF615Q8N8J6 731 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 OR7G2Q8NG99 324 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 CEP70Q8NHQ1 597 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 C16orf52Q8NHV5 167 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 ERP27Q96DN0 273 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 CCDC120Q96HB5 630 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 MAELQ96JY0 434 aaKnown RBP16.45■□□□□ 0.22
CLN3-247ENST00000636351 RASL10BQ96S79 203 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 ZBTB18Q99592 522 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 RUBCNLQ9H714 662 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 ANKRA2Q9H9E1 313 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 NPHS2Q9NP85 383 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 TCF7L2Q9NQB0 619 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 HPF1Q9NWY4 346 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 LRFN1Q9P244 771 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 SEC14L3Q9UDX4 400 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 PRODH2Q9UF12 536 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 ZNF639Q9UID6 485 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 SH3BGRL2Q9UJC5 107 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 ERVK-11Q9UQG0 969 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 ZGRF1Q86YA3 2104 aa16.45■□□□□ 0.22
CLN3-247ENST00000636351 ZNF195O14628 629 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 EDF1O60869 148 aaKnown RBP16.44■□□□□ 0.22
CLN3-247ENST00000636351 SLITRK5O94991 958 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 CRYABP02511 175 aaKnown RBP16.44■□□□□ 0.22
CLN3-247ENST00000636351 VIMP08670 466 aaKnown RBP16.44■□□□□ 0.22
CLN3-247ENST00000636351 IDO1P14902 403 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 POU3F2P20265 443 aaPredicted RBP16.44■□□□□ 0.22
CLN3-247ENST00000636351 S1PR1P21453 382 aa16.44■□□□□ 0.22
CLN3-247ENST00000636351 NR0B1P51843 470 aaKnown RBP16.44■□□□□ 0.22
CLN3-247ENST00000636351 CLNS1AP54105 237 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms