RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 DUSP8Q13202 625 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 PTGR1Q14914 329 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 SLC22A10Q63ZE4 541 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 NATD1Q8N6N6 113 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 SIMC1Q8NDZ2 872 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 FAM13CQ8NE31 585 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 OR7G2Q8NG99 324 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 LRRC8CQ8TDW0 803 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 FRMD6Q96NE9 622 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 ACSS1Q9NUB1 689 aaPredicted RBP19.1■□□□□ 0.65
CLN3-240ENST00000631023 ATAD3AQ9NVI7 634 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 DTX4Q9Y2E6 619 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 ZNF407Q9C0G0 2248 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 IFI6P09912 130 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 KITP10721 976 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 G6PDP11413 515 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 CNR1P21554 472 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 GPC1P35052 558 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 MC3RP41968 323 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 MEOX1P50221 254 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 CPTPQ5TA50 214 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 TMEM107Q6UX40 140 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 LYPD8Q6UX82 237 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 CPSF7Q8N684 471 aaKnown RBP19.1■□□□□ 0.65
CLN3-240ENST00000631023 CIDECQ96AQ7 238 aaPredicted RBP19.1■□□□□ 0.65
CLN3-240ENST00000631023 ELP4Q96EB1 424 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 ITPAQ9BY32 194 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 NXF5Q9H1B4 397 aaKnown RBP19.1■□□□□ 0.65
CLN3-240ENST00000631023 CNIH4Q9P003 139 aa19.1■□□□□ 0.65
CLN3-240ENST00000631023 MARCOQ9UEW3 520 aaPredicted RBP19.1■□□□□ 0.65
CLN3-240ENST00000631023 TENM4Q6N022 2769 aa19.09■□□□□ 0.65
CLN3-240ENST00000631023 DIDO1Q9BTC0 2240 aaKnown RBP19.09■□□□□ 0.65
CLN3-240ENST00000631023 TP53I11O14683 189 aa19.09■□□□□ 0.65
CLN3-240ENST00000631023 NAGAP17050 411 aa19.09■□□□□ 0.65
CLN3-240ENST00000631023 GPR85P60893 370 aa19.09■□□□□ 0.65
CLN3-240ENST00000631023 HSPB3Q12988 150 aa19.09■□□□□ 0.65
CLN3-240ENST00000631023 MRPL49Q13405 166 aaKnown RBP19.09■□□□□ 0.65
CLN3-240ENST00000631023 NTRK2Q16620 822 aa19.09■□□□□ 0.65
CLN3-240ENST00000631023 ZNF385BQ569K4 471 aa19.09■□□□□ 0.65
CLN3-240ENST00000631023 FHL5Q5TD97 284 aa19.09■□□□□ 0.65
CLN3-240ENST00000631023 ZNF551Q7Z340 670 aaPredicted RBP19.09■□□□□ 0.65
CLN3-240ENST00000631023 WDR75Q8IWA0 830 aaKnown RBP19.09■□□□□ 0.65
CLN3-240ENST00000631023 PIWIL2Q8TC59 973 aaKnown RBP19.09■□□□□ 0.65
CLN3-240ENST00000631023 ANKRA2Q9H9E1 313 aa19.09■□□□□ 0.65
CLN3-240ENST00000631023 INTS9Q9NV88 658 aaKnown RBP19.09■□□□□ 0.65
CLN3-240ENST00000631023 DDX18Q9NVP1 670 aaKnown RBP19.09■□□□□ 0.65
CLN3-240ENST00000631023 C19orf53Q9UNZ5 99 aaPredicted RBP19.09■□□□□ 0.65
CLN3-240ENST00000631023 FLNCQ14315 2725 aa19.09■□□□□ 0.65
CLN3-240ENST00000631023 ZNF24P17028 368 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 ABCD3P28288 659 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 FRKP42685 505 aaPredicted RBP19.08■□□□□ 0.65
CLN3-240ENST00000631023 UQCRFS1P47985 274 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 CLDN8P56748 225 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 PSPHP78330 225 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 RPP38P78345 283 aaKnown RBP19.08■□□□□ 0.65
CLN3-240ENST00000631023 KRTCAP3Q53RY4 240 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 TMEM64Q6YI46 380 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 GK5Q6ZS86 529 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 FAM47EQ6ZV65 393 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 LARP4Q71RC2 724 aaKnown RBP eCLIP19.08■□□□□ 0.651e-6■□□□□ 8.2
CLN3-240ENST00000631023 OR2L13Q8N349 312 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 ZFP62Q8NB50 900 aaPredicted RBP19.08■□□□□ 0.65
CLN3-240ENST00000631023 OR7A2PQ8NGA2 310 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 PAQR8Q8TEZ7 354 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 MAGED4Q96JG8 741 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 FAM173AQ9BQD7 235 aa19.08■□□□□ 0.65
CLN3-240ENST00000631023 GPR55Q9Y2T6 319 aaPredicted RBP19.08■□□□□ 0.65
CLN3-240ENST00000631023 MYO7BQ6PIF6 2116 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 FRG2CA6NGY1 282 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 ERN1O75460 977 aaKnown RBP19.07■□□□□ 0.64
CLN3-240ENST00000631023 CCL3P10147 92 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 MST1P26927 711 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 TDGF1P3P51864 188 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 RPS6KA2Q15349 733 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 NNATQ16517 81 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 GFRALQ6UXV0 394 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 OR2M7Q8NG81 312 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 OR10G3Q8NGC4 313 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 OR5M3Q8NGP4 307 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 PRR7Q8TB68 274 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 VSTM2LQ96N03 204 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 BTBD9Q96Q07 612 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 FOLH1BQ9HBA9 442 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 DEPPQ9NTK1 212 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 SEC14L3Q9UDX4 400 aa19.07■□□□□ 0.64
CLN3-240ENST00000631023 UQCRHLA0A096LP55 91 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 UPK1AO00322 258 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 SDHDO14521 159 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 TO15178 435 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 LAMP1P11279 417 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 DIO3P55073 304 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 C21orf58P58505 322 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 MLC1Q15049 377 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 EIF2S3LQ2VIR3 472 aaKnown RBP19.06■□□□□ 0.64
CLN3-240ENST00000631023 OGFOD2Q6N063 350 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 RIMKLAQ8IXN7 391 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 PRR22Q8IZ63 422 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 FBXW8Q8N3Y1 598 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 KRTCAP2Q8N6L1 136 aa19.06■□□□□ 0.64
CLN3-240ENST00000631023 CEP70Q8NHQ1 597 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms