RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 LAIR1Q6GTX8 287 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 FAM111BQ6SJ93 734 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 PRSS41Q7RTY9 318 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 C16orf62Q7Z3J2 963 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 C17orf82Q86X59 251 aaPredicted RBP20.68■□□□□ 0.9
PNKP-220ENST00000627232 RBM45Q8IUH3 476 aaKnown RBP20.68■□□□□ 0.9
PNKP-220ENST00000627232 LACC1Q8IV20 430 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 LINC00471Q8N535 108 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 COL26A1Q96A83 441 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 C12orf43Q96C57 262 aaKnown RBP20.68■□□□□ 0.9
PNKP-220ENST00000627232 SLC35A4Q96G79 324 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 FAM60AQ9NP50 221 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 PLCXD1Q9NUJ7 323 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 TMEM74BQ9NUR3 256 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 A4GNTQ9UNA3 340 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 C19orf53Q9UNZ5 99 aaPredicted RBP20.68■□□□□ 0.9
PNKP-220ENST00000627232 TRBV4-1A0A0J9YWV2 114 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 SRPX2O60687 465 aaPredicted RBP20.68■□□□□ 0.9
PNKP-220ENST00000627232 FAM20BO75063 409 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 EPPINO95925 133 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 GASTP01350 101 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 PROS1P07225 676 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 PCMT1P22061 227 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 FUT4P22083 530 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 MAPK10P53779 464 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 TMBIM6P55061 237 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 FGD3Q5JSP0 725 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 FHL5Q5TD97 284 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 GPR107Q5VW38 600 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 SLC36A4Q6YBV0 504 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 MCATQ8IVS2 390 aaKnown RBP20.68■□□□□ 0.9
PNKP-220ENST00000627232 OR4N5Q8IXE1 308 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 ARHGEF39Q8N4T4 335 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 DNAJC22Q8N4W6 341 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 APH1BQ8WW43 257 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 CLDN23Q96B33 292 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 SPACA7Q96KW9 195 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 ANKHQ9HCJ1 492 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 CDC14AQ9UNH5 594 aa20.68■□□□□ 0.9
PNKP-220ENST00000627232 SZT2Q5T011 3432 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 A0A1W2PRQ8 180 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 UGT2B17O75795 530 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 MAOBP27338 520 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 PCSK6P29122 969 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 KRT20P35900 424 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 NXPH1P58417 271 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 HNRNPKP61978 463 aaKnown RBP eCLIP20.67■□□□□ 0.9
PNKP-220ENST00000627232 DGCR6Q14129 220 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 NPTX1Q15818 432 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 PRTGQ2VWP7 1150 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 EXOSC6Q5RKV6 272 aaKnown RBP20.67■□□□□ 0.9
PNKP-220ENST00000627232 CWF19L1Q69YN2 538 aaKnown RBP20.67■□□□□ 0.9
PNKP-220ENST00000627232 NIPAL1Q6NVV3 410 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 OGFOD3Q6PK18 319 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 DHRS4L2Q6PKH6 230 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 KLHL17Q6TDP4 642 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 OLIG3Q7RTU3 272 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 COMTD1Q86VU5 262 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 SIX5Q8N196 739 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 SVOPQ8N4V2 548 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 RHOXF1Q8NHV9 184 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 FAM81AQ8TBF8 368 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 ZNF675Q8TD23 568 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 GTPBP3Q969Y2 492 aaKnown RBP20.67■□□□□ 0.9
PNKP-220ENST00000627232 TCTN2Q96GX1 697 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 PRRC1Q96M27 445 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 ARHGDIGQ99819 225 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 WFDC6Q9BQY6 131 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 LHPPQ9H008 270 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 ANKRA2Q9H9E1 313 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 RASSF1Q9NS23 344 aa20.67■□□□□ 0.9
PNKP-220ENST00000627232 SLC9B1P1A6NJY1 282 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 M0R3H8 397 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 AQP9O43315 295 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 PLOD3O60568 738 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 NOL3O60936 208 aaKnown RBP20.66■□□□□ 0.9
PNKP-220ENST00000627232 PRKAR1BP31321 381 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 CRISP1P54107 249 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 SKP1P63208 163 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 HPCAP84074 193 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 SHC2P98077 582 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 CHRNEQ04844 493 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 PIGFQ07326 219 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 DYNC1I2Q13409 638 aaKnown RBP20.66■□□□□ 0.9
PNKP-220ENST00000627232 ARHGAP11BQ3KRB8 267 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 ZNF311Q5JNZ3 666 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 ZCCHC12Q6PEW1 402 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 Q6ZPB1 254 aaPredicted RBP20.66■□□□□ 0.9
PNKP-220ENST00000627232 P3H2Q8IVL5 708 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 TMEFF1Q8IYR6 380 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 ZNF540Q8NDQ6 660 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 C1orf216Q8TAB5 229 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 SLC38A3Q99624 504 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 FNDC11Q9BVV2 318 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 DGCR6LQ9BY27 220 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 ERVK-18Q9QC07 812 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 AASSQ9UDR5 926 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 FTSJ1Q9UET6 329 aa20.66■□□□□ 0.9
PNKP-220ENST00000627232 COLQQ9Y215 455 aaPredicted RBP20.66■□□□□ 0.9
PNKP-220ENST00000627232 SH3PXD2BA1X283 911 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms