RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 ACTR6Q9GZN1 396 aa12.47□□□□□ -0.41
SNX1-214ENST00000625244 RNF122Q9H9V4 155 aa12.47□□□□□ -0.41
SNX1-214ENST00000625244 IKZF3Q9UKT9 509 aa12.47□□□□□ -0.41
SNX1-214ENST00000625244 B3GALT5Q9Y2C3 310 aa12.47□□□□□ -0.41
SNX1-214ENST00000625244 ZCWPW2A0A1B0GU75 182 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 ANKDD1BA6NHY2 528 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 CDH16O75309 829 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 RHOXF2BP0C7M4 288 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 TCEA1P23193 301 aaKnown RBP12.46□□□□□ -0.41
SNX1-214ENST00000625244 ABCD3P28288 659 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 SSTR4P31391 388 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 KCNC1P48547 511 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 RPS13P62277 151 aaKnown RBP12.46□□□□□ -0.41
SNX1-214ENST00000625244 SARNPP82979 210 aaKnown RBP12.46□□□□□ -0.41
SNX1-214ENST00000625244 FAM166AQ6J272 317 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 SLC30A6Q6NXT4 461 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 KLHL7Q8IXQ5 586 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 UBQLNLQ8IYU4 475 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 ST13P4Q8IZP2 240 aaPredicted RBP12.46□□□□□ -0.41
SNX1-214ENST00000625244 C7orf57Q8NEG2 295 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 RIT1Q92963 219 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 ADIPOR1Q96A54 375 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 KCNC2Q96PR1 638 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 OSBPL11Q9BXB4 747 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 DDX47Q9H0S4 455 aaKnown RBP12.46□□□□□ -0.41
SNX1-214ENST00000625244 EML4Q9HC35 981 aaKnown RBP12.46□□□□□ -0.41
SNX1-214ENST00000625244 TAS2R13Q9NYV9 303 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 FBXO5Q9UKT4 447 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 SPACA6W5XKT8 324 aa12.46□□□□□ -0.41
SNX1-214ENST00000625244 WASHC1A8K0Z3 465 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 H0YC42 278 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 PRKRAO75569 313 aaKnown RBP12.45□□□□□ -0.42
SNX1-214ENST00000625244 CD3EP07766 207 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 SLC25A16P16260 332 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 GNAZP19086 355 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 PTNP21246 168 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 GSTM2P28161 218 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 HPDP32754 393 aaPredicted RBP12.45□□□□□ -0.42
SNX1-214ENST00000625244 VPS41P49754 854 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 TPD52P55327 224 aaPredicted RBP12.45□□□□□ -0.42
SNX1-214ENST00000625244 NRG3P56975 720 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 DSCR9P59020 149 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 TGM3Q08188 693 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 BIKQ13323 160 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 FGFBP1Q14512 234 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 BCL2A1Q16548 175 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 NRF1Q16656 503 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 NCMAPQ5T1S8 102 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 RBM20Q5T481 1227 aaKnown RBP12.45□□□□□ -0.42
SNX1-214ENST00000625244 TTC27Q6P3X3 843 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 DNAJC14Q6Y2X3 702 aaPredicted RBP12.45□□□□□ -0.42
SNX1-214ENST00000625244 ATG4DQ86TL0 474 aaPredicted RBP12.45□□□□□ -0.42
SNX1-214ENST00000625244 ZNF525Q8N782 197 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 KBTBD8Q8NFY9 601 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 FNDC9Q8TBE3 224 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 HGDQ93099 445 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 RHBDF1Q96CC6 855 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 ALG2Q9H553 416 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 RPF2Q9H7B2 306 aaKnown RBP12.45□□□□□ -0.42
SNX1-214ENST00000625244 NT5DC2Q9H857 520 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 ASIC3Q9UHC3 531 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 FBXL2Q9UKC9 423 aa12.45□□□□□ -0.42
SNX1-214ENST00000625244 ZNF490Q9ULM2 529 aaPredicted RBP12.45□□□□□ -0.42
SNX1-214ENST00000625244 EXPH5Q8NEV8 1989 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 LOC100289279A0A1B0GTE1 492 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 KIAA0513O60268 411 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 HNF1AP20823 631 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 HIST1H1TP22492 207 aaPredicted RBP12.44□□□□□ -0.42
SNX1-214ENST00000625244 CNTFP26441 200 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 SRD5A2P31213 254 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 GDF5P43026 501 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 SUCLG1P53597 346 aaKnown RBP12.44□□□□□ -0.42
SNX1-214ENST00000625244 IL2P60568 153 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 IRX1P78414 480 aaPredicted RBP12.44□□□□□ -0.42
SNX1-214ENST00000625244 LSM11P83369 360 aaKnown RBP eCLIP12.44□□□□□ -0.42
SNX1-214ENST00000625244 CDK16Q00536 496 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 DR1Q01658 176 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 TRIP13Q15645 432 aaPredicted RBP12.44□□□□□ -0.42
SNX1-214ENST00000625244 WHAMMP3Q1A5X7 153 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 CTU2Q2VPK5 515 aaKnown RBP12.44□□□□□ -0.42
SNX1-214ENST00000625244 C18orf21Q32NC0 220 aaPredicted RBP12.44□□□□□ -0.42
SNX1-214ENST00000625244 HLA-DQA1Q5Y7H0 255 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 C18orf63Q68DL7 685 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 TMEM81Q6P7N7 255 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 FAM214BQ7L5A3 538 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 DTX2Q86UW9 622 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 KRT78Q8N1N4 520 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 C3orf56Q8N813 242 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 MNS1Q8NEH6 495 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 HTRA1Q92743 480 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 TBCDQ9BTW9 1192 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 PINK1Q9BXM7 581 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 ROGDIQ9GZN7 287 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 PLSCR4Q9NRQ2 329 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 KLRF1Q9NZS2 232 aa12.44□□□□□ -0.42
SNX1-214ENST00000625244 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.43□□□□□ -0.42
SNX1-214ENST00000625244 ZIC3O60481 467 aa12.43□□□□□ -0.42
SNX1-214ENST00000625244 PRAMEF4O60810 478 aa12.43□□□□□ -0.42
SNX1-214ENST00000625244 SCELO95171 688 aa12.43□□□□□ -0.42
SNX1-214ENST00000625244 ENO2P09104 434 aaPredicted RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms