RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 RUNX2Q13950 521 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 FAAH2Q6GMR7 532 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 NATD1Q8N6N6 113 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 SMRP1Q8NCR6 262 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 OR7G2Q8NG99 324 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 FLVCR1-AS1Q8TAF5 88 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 ZNF681Q96N22 645 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 OR7D2Q96RA2 312 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 POLR2J3Q9H1A7 115 aaKnown RBP9.99□□□□□ -0.81
CUX1-221ENST00000622516 EVA1BQ9NVM1 165 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 ANKMY1Q9P2S6 941 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 FTSJ1Q9UET6 329 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 ABCA7Q8IZY2 2146 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 CABIN1Q9Y6J0 2220 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 KCNJ13O60928 360 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 ENTPD6O75354 484 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 NADKO95544 446 aaPredicted RBP9.98□□□□□ -0.81
CUX1-221ENST00000622516 SEMA4FO95754 770 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 DRD1P21728 446 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 CPN2P22792 545 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 GRK5P34947 590 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 PXNP49023 591 aaPredicted RBP9.98□□□□□ -0.81
CUX1-221ENST00000622516 KIAA1024LP59773 190 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 CDC42P60953 191 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 DBPQ10586 325 aaPredicted RBP9.98□□□□□ -0.81
CUX1-221ENST00000622516 TIGD6Q17RP2 521 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 DEFB110Q30KQ9 67 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 SMUG1Q53HV7 270 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 CCNJQ5T5M9 372 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 FCRL6Q6DN72 434 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 PGBD2Q6P3X8 592 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 USP30Q70CQ3 517 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 IQCHQ86VS3 1027 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 SLC30A8Q8IWU4 369 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 SVOPQ8N4V2 548 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 FAM3CQ92520 227 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 LGALS12Q96DT0 336 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 MSLNLQ96KJ4 702 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 OR2A5Q96R48 311 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 OR5M11Q96RB7 305 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 SIGLEC11Q96RL6 698 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 SPOCK3Q9BQ16 436 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 CENPOQ9BU64 300 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 FNDC11Q9BVV2 318 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 UCK2Q9BZX2 261 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 ZNF576Q9H609 170 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 REV1Q9UBZ9 1251 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 PMF1-BGLAPU3KQ54 211 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 CACNA1IQ9P0X4 2223 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 LRRC72A6NJI9 287 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 CPSF4LA6NMK7 179 aaKnown RBP9.98□□□□□ -0.81
CUX1-221ENST00000622516 GABARAPO95166 117 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 APOL3O95236 402 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 ZIC2O95409 532 aaPredicted RBP9.98□□□□□ -0.81
CUX1-221ENST00000622516 CDK1P06493 297 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 FHP07954 510 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 SLC35G6P0C7Q6 338 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 NR2F6P10588 404 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 TGFBR2P37173 567 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 KHKP50053 298 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 PSMD7P51665 324 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 MAP4K2Q12851 820 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 ITGADQ13349 1161 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 MLC1Q15049 377 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 MED22Q15528 200 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 FIGLAQ6QHK4 219 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 ZER1Q7Z7L7 766 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 KRT73Q86Y46 540 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 IPCEF1Q8WWN9 437 aaPredicted RBP9.98□□□□□ -0.81
CUX1-221ENST00000622516 KLHL6Q8WZ60 621 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 NACC2Q96BF6 587 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 CCNB1IP1Q9NPC3 277 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 HRASLS2Q9NWW9 162 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 ACTR10Q9NZ32 417 aa9.98□□□□□ -0.81
CUX1-221ENST00000622516 A6NCN8 305 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 SHISA7A6NL88 538 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 ZAR1LA6NP61 321 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 GADD45AP24522 165 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 IDUAP35475 653 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 PDX1P52945 283 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 PRR5P85299 388 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 RGS1Q08116 209 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 ILF3Q12906 894 aaKnown RBP eCLIP9.97□□□□□ -0.814e-7■■■■□ 21.7
CUX1-221ENST00000622516 CBX3Q13185 183 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 MOGQ16653 247 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 ZNF829Q3KNS6 432 aaPredicted RBP9.97□□□□□ -0.81
CUX1-221ENST00000622516 TRMT12Q53H54 448 aaKnown RBP9.97□□□□□ -0.81
CUX1-221ENST00000622516 ZNF311Q5JNZ3 666 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 MLIPQ5VWP3 458 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 TCEANCQ8N8B7 351 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 ZNF675Q8TD23 568 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 TOE1Q96GM8 510 aaKnown RBP9.97□□□□□ -0.81
CUX1-221ENST00000622516 PLEKHA8Q96JA3 519 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 GDF15Q99988 308 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 GPR174Q9BXC1 333 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 TPSD1Q9BZJ3 242 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 POLMQ9NP87 494 aaPredicted RBP9.97□□□□□ -0.81
CUX1-221ENST00000622516 MAN2C1Q9NTJ4 1040 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 GIMAP4Q9NUV9 329 aa9.97□□□□□ -0.81
CUX1-221ENST00000622516 TVP23BQ9NYZ1 205 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms