RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 HEMK1Q9Y5R4 338 aaPredicted RBP18.28■□□□□ 0.52
UPF3A-211ENST00000618700 ATMQ13315 3056 aa18.28■□□□□ 0.52
UPF3A-211ENST00000618700 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 NDUFAB1O14561 156 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 SNRPB2P08579 225 aaKnown RBP18.27■□□□□ 0.52
UPF3A-211ENST00000618700 PRR5P85299 388 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 RAPSNQ13702 412 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 CRB2Q5IJ48 1285 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 B3GNTL1Q67FW5 361 aaPredicted RBP18.27■□□□□ 0.52
UPF3A-211ENST00000618700 SLC2A7Q6PXP3 512 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 SLC29A4Q7RTT9 530 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 OR5L2Q8NGL0 311 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 BCAS4Q8TDM0 211 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 ADIPOR1Q96A54 375 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 MOAP1Q96BY2 351 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 GIMAP5Q96F15 307 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 ITCHQ96J02 903 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 MAGED4Q96JG8 741 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 PANX1Q96RD7 426 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 ITPAQ9BY32 194 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 C3orf14Q9HBI5 128 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 ZCCHC3Q9NUD5 404 aaKnown RBP18.27■□□□□ 0.52
UPF3A-211ENST00000618700 PRODH2Q9UF12 536 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 SNX8Q9Y5X2 465 aa18.27■□□□□ 0.52
UPF3A-211ENST00000618700 CPAMD8Q8IZJ3 1885 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 RNF103-CHMP3A0A140T963 221 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 A8MUI8 341 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 RFXANKO14593 260 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 MAN1A2O60476 641 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 CPSF4O95639 269 aaKnown RBP18.26■□□□□ 0.51
UPF3A-211ENST00000618700 HOXB9P17482 250 aaPredicted RBP18.26■□□□□ 0.51
UPF3A-211ENST00000618700 PTPN6P29350 595 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 SOAT1P35610 550 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 TRPC1P48995 793 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 CCT3P49368 545 aaKnown RBP18.26■□□□□ 0.51
UPF3A-211ENST00000618700 RHDQ02161 417 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 MAPRE2Q15555 327 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 PAGE3Q5JUK9 113 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 AGAP7PQ5VUJ5 663 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 FCRLBQ6BAA4 426 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 TCTN3Q6NUS6 607 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 CCDC197Q8NCU1 140 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 C17orf47Q8NEP4 570 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 NUP43Q8NFH3 380 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 OR56A1Q8NGH5 318 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 OR5AK3PQ8NH89 298 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 THAP3Q8WTV1 239 aaPredicted RBP18.26■□□□□ 0.51
UPF3A-211ENST00000618700 HOXB13Q92826 284 aaPredicted RBP18.26■□□□□ 0.51
UPF3A-211ENST00000618700 AGAP4Q96P64 663 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 MS4A4EQ96PG1 132 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 SMAD5Q99717 465 aaKnown RBP18.26■□□□□ 0.51
UPF3A-211ENST00000618700 SLC25A23Q9BV35 468 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 FOLH1BQ9HBA9 442 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 SLC6A13Q9NSD5 602 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 MYOTQ9UBF9 498 aa18.26■□□□□ 0.51
UPF3A-211ENST00000618700 LEF1Q9UJU2 399 aaPredicted RBP18.26■□□□□ 0.51
UPF3A-211ENST00000618700 NUP214P35658 2090 aaPredicted RBP18.26■□□□□ 0.51
UPF3A-211ENST00000618700 C2orf92A0A1B0GVN3 265 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 NME6O75414 186 aaPredicted RBP18.25■□□□□ 0.51
UPF3A-211ENST00000618700 DCTN3O75935 186 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 ZCCHC18P0CG32 403 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 UQCRC2P22695 453 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 MLF1P58340 268 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 SPDYE7PQ495Y7 208 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 ACER2Q5QJU3 275 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 EXOSC6Q5RKV6 272 aaKnown RBP18.25■□□□□ 0.51
UPF3A-211ENST00000618700 MFSD12Q6NUT3 480 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 DNAJC14Q6Y2X3 702 aaPredicted RBP18.25■□□□□ 0.51
UPF3A-211ENST00000618700 RETREG3Q86VR2 466 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 RPS19BP1Q86WX3 136 aaKnown RBP18.25■□□□□ 0.51
UPF3A-211ENST00000618700 TREML1Q86YW5 311 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 ZNF354BQ96LW1 612 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 BTBD9Q96Q07 612 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 GAL3ST4Q96RP7 486 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 PAIP1Q9H074 479 aaKnown RBP18.25■□□□□ 0.51
UPF3A-211ENST00000618700 EPS8L2Q9H6S3 715 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 TEKT2Q9UIF3 430 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 NDUFAF1Q9Y375 327 aa18.25■□□□□ 0.51
UPF3A-211ENST00000618700 A0A096LPI6 279 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 CAPN14A8MX76 684 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 MKRN2OSH3BPM6 223 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 FBP2O00757 339 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 NADKO95544 446 aaPredicted RBP18.24■□□□□ 0.51
UPF3A-211ENST00000618700 MAP3K8P41279 467 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 PRKAG1P54619 331 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 ZNF155Q12901 538 aaPredicted RBP18.24■□□□□ 0.51
UPF3A-211ENST00000618700 MFAP5Q13361 173 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 MEP1AQ16819 746 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 C6orf10Q5SRN2 563 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 LRIF1Q5T3J3 769 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 SAXO2Q658L1 398 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 FAM91A1Q658Y4 838 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 IGFL2Q6UWQ7 119 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 ISLR2Q6UXK2 745 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 C16orf47Q6ZP98 133 aaPredicted RBP18.24■□□□□ 0.51
UPF3A-211ENST00000618700 SZRD1Q7Z422 152 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 SNX32Q86XE0 403 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 DPP10Q8N608 796 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 TRIML2Q8N7C3 387 aa18.24■□□□□ 0.51
UPF3A-211ENST00000618700 TP53INP1Q96A56 240 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms