RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 OOSP2Q86WS3 158 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 CALHM3Q86XJ0 350 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 YIPF7Q8N8F6 280 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 ANKK1Q8NFD2 765 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 OR8J2Q8NGG1 315 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 MRPL38Q96DV4 380 aaKnown RBP13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 NIPSNAP1Q9BPW8 284 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 TM9SF3Q9HD45 589 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 ZC4H2Q9NQZ6 224 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 IMPAD1Q9NX62 359 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 THAP10Q9P2Z0 257 aaPredicted RBP13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 PCDHGA6Q9Y5G7 932 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 B4DGG1 531 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 BTN3A3O00478 584 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 PGRMC2O15173 223 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 NTN1O95631 604 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 CKMT1AP12532 417 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 PVRP15151 417 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 GPX2P18283 190 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 FPR1P21462 350 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 PTX3P26022 381 aaPredicted RBP13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 BUD31P41223 144 aaPredicted RBP13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 CCR8P51685 355 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 SYPL1Q16563 259 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 PDZD3Q86UT5 571 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 PRSS58Q8IYP2 241 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 HORMAD2Q8N7B1 307 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 KCT2Q8NC54 265 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 SMAD5Q99717 465 aaKnown RBP13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 ZCCHC3Q9NUD5 404 aaKnown RBP13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 DUSP12Q9UNI6 340 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 HEATR5BQ9P2D3 2071 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 CDK2AP1O14519 115 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 SNX4O95219 450 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 EGFP01133 1207 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 NR2F1P10589 423 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 TNNI3P19429 210 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 POU6F2P78424 691 aaPredicted RBP13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 KCNC3Q14003 757 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 MLF2Q15773 248 aaPredicted RBP13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 C18orf63Q68DL7 685 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 CCDC190Q86UF4 302 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 ADGRF3Q8IZF5 1079 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 LGI4Q8N135 537 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 FBXL6Q8N531 539 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 TBC1D19Q8N5T2 526 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 HHIPQ96QV1 700 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 WFDC6Q9BQY6 131 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 KLHL42Q9P2K6 505 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 IL20RAQ9UHF4 553 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 MAN2B2Q9Y2E5 1009 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 CLCA3PQ9Y6N3 262 aa13.68□□□□□ -0.22
SHROOM1-208ENST00000617339 PSKH1P11801 424 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 CRYBA2P53672 197 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 SRSF5Q13243 272 aaKnown RBP13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 TMEM196Q5HYL7 178 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 SLC9B2Q86UD5 537 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 OR52E1Q8NGJ3 308 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 WDR36Q8NI36 951 aaKnown RBP13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 ASPNQ9BXN1 380 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 RBCK1Q9BYM8 510 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 UCKL1Q9NWZ5 548 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 CELSR3Q9NYQ7 3312 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 CACNA1CQ13936 2221 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 WWP2O00308 870 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 FCARP24071 287 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 SOX3P41225 446 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 NCBP2P52298 156 aaKnown RBP eCLIP13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 EFR3AQ14156 821 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 KHDRBS2Q5VWX1 349 aaKnown RBP13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 TRIM40Q6P9F5 258 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 ZNF514Q96K75 400 aaPredicted RBP13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 CAMK1GQ96NX5 476 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 DHRS9Q9BPW9 319 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 TMEM168Q9H0V1 697 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 MRPS30Q9NP92 439 aaKnown RBP13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 C12orf4Q9NQ89 552 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 AHSPQ9NZD4 102 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 PSORS1C1Q9UIG5 152 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 ASXL3Q9C0F0 2248 aa13.67□□□□□ -0.22
SHROOM1-208ENST00000617339 OR10H3O60404 316 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 ZNF780AO75290 641 aaPredicted RBP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 ITGA2P17301 1181 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 POLR2CP19387 275 aaPredicted RBP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 COL9A1P20849 921 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 MLLT1Q03111 559 aaPredicted RBP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 ILF3Q12906 894 aaKnown RBP eCLIP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 PIN1Q13526 163 aaPredicted RBP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 CDKL4Q5MAI5 379 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 EIF3MQ7L2H7 374 aaKnown RBP13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 SERPINA11Q86U17 422 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 GRAMD2AQ8IUY3 354 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 GPR65Q8IYL9 337 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 OR10G2Q8NGC3 310 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 ENKURQ8TC29 256 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 FCGR1BQ92637 280 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 PMEPA1Q969W9 287 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 C16orf58Q96GQ5 468 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 RNF170Q96K19 258 aa13.66□□□□□ -0.22
SHROOM1-208ENST00000617339 ACOXLQ9NUZ1 547 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms