RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 TACR1P25103 407 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 CEACAM8P31997 349 aaPredicted RBP16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 GCKP35557 465 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 ZNF136P52737 540 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 NAGLUP54802 743 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 MRPS35P82673 323 aaKnown RBP16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 DUSP2Q05923 314 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 SF3B4Q15427 424 aaKnown RBP eCLIP16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 PRICKLE4Q2TBC4 344 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 FLYWCH1Q4VC44 716 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 TRMT12Q53H54 448 aaKnown RBP16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 PLXDC2Q6UX71 529 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 NUP54Q7Z3B4 507 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 CDYL2Q8N8U2 506 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 OR14L1PQ8NHC6 308 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 LINC01560Q8TB33 94 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 WDYHV1Q96HA8 205 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 TMEM41AQ96HV5 264 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 LCORQ96JN0 433 aaPredicted RBP16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 C16orf45Q96MC5 204 aaPredicted RBP16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 SECISBP2Q96T21 854 aaKnown RBP16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 FAIM2Q9BWQ8 316 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 OSBPL11Q9BXB4 747 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 MRPL46Q9H2W6 279 aaKnown RBP16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 UBQLN3Q9H347 655 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 ANKRA2Q9H9E1 313 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 RASSF1Q9NS23 344 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 ST6GALNAC2Q9UJ37 374 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 CES1P1Q9UKY3 287 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 CFL2Q9Y281 166 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 PLLPQ9Y342 182 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 PCDHGB3Q9Y5G1 929 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 MTORP42345 2549 aa16.05■□□□□ 0.16
SHKBP1-223ENST00000600552 A6NNC1 897 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 A8MT66 165 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 ICOSLGO75144 302 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 REM1O75628 298 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 RPS17P08708 135 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 DNASE1P24855 282 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 PTPN6P29350 595 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 TIMP3P35625 211 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 MAGEA12P43365 314 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 DGKQP52824 942 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 MGAT2Q10469 447 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 GALNT1Q10472 559 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 MAP4K2Q12851 820 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 RCAN2Q14206 197 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 NSUN5P2Q63ZY6 315 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 CDC20BQ86Y33 519 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 CCDC116Q8IYX3 515 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 ZNF483Q8TF39 744 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 FAM222BQ8WU58 562 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 KAT2AQ92830 837 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 EXOSC8Q96B26 276 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 SH3GL2Q99962 352 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 PRDM14Q9GZV8 571 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 NMRK1Q9NWW6 199 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 DMGDHQ9UI17 866 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 UTS2RQ9UKP6 389 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 ABCA4P78363 2273 aa16.04■□□□□ 0.16
SHKBP1-223ENST00000600552 TUBAL3A6NHL2 446 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 H0Y3Z8 333 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 MANBAO00462 879 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 UGT2B11O75310 529 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 SUPT7LO94864 414 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 CBX7O95931 251 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 COL6A2P12110 1019 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 CYP4B1P13584 511 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 CHN1P15882 459 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 CTSSP25774 331 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 PPP2R2AP63151 447 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 BTKQ06187 659 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 GGTA1PQ4G0N0 100 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 C10orf62Q5T681 223 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 SLC30A6Q6NXT4 461 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 C9orf106Q8NAJ2 232 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 CDC26Q8NHZ8 85 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 DCAKDQ8WVC6 231 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 HGDQ93099 445 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 TMBIM1Q969X1 311 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 FMO2Q99518 471 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 RYDENQ9NUL5 291 aaKnown RBP16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 HEY2Q9UBP5 337 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 ZNF629Q9UEG4 869 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 CBLCQ9ULV8 474 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 MAP1AP78559 2803 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 DOCK7Q96N67 2140 aa16.03■□□□□ 0.16
SHKBP1-223ENST00000600552 A0A087WUV0 522 aaPredicted RBP16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 GNG14A0A1W2PPG7 69 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 PRAMEF25A6NGN4 478 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 ATP1B1P05026 303 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 TMIGD3P0DMS9 266 aaPredicted RBP16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 TAC1P20366 129 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 HMOX2P30519 316 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 HSD17B3P37058 310 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 STARP49675 285 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 CLCQ05315 142 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 OR5M10Q6IEU7 315 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 POMZP3Q6PJE2 187 aa16.02■□□□□ 0.16
SHKBP1-223ENST00000600552 SCIMPQ6UWF3 145 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms