RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 PRODH2Q9UF12 536 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 CFL2Q9Y281 166 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 NPFFR2Q9Y5X5 522 aa14.02□□□□□ -0.17
LIG1-219ENST00000600055 GOLGA8QA0A0J9YX86 632 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 GOLGA8OA6NCC3 632 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 GOLGA8NF8WBI6 632 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 UPK1AO00322 258 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 PLOD2O00469 737 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 KLF11O14901 512 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 HDAC3O15379 428 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 BCAS2O75934 225 aaPredicted RBP14.01□□□□□ -0.17
LIG1-219ENST00000600055 LBPP18428 481 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 CNR1P21554 472 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 HPCAL1P37235 193 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 PIGAP37287 484 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 FRKP42685 505 aaPredicted RBP14.01□□□□□ -0.17
LIG1-219ENST00000600055 CDK9P50750 372 aaKnown RBP14.01□□□□□ -0.17
LIG1-219ENST00000600055 CORO7P57737 925 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 KCNK10P57789 538 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 MAD2L1Q13257 205 aaPredicted RBP14.01□□□□□ -0.17
LIG1-219ENST00000600055 NTRK2Q16620 822 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 SMU1Q2TAY7 513 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 DESI1Q6ICB0 168 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 NPSR1Q6W5P4 371 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 LARP4Q71RC2 724 aaKnown RBP eCLIP14.01□□□□□ -0.17
LIG1-219ENST00000600055 MAVSQ7Z434 540 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 R3HCC1LQ7Z5L2 792 aaKnown RBP14.01□□□□□ -0.17
LIG1-219ENST00000600055 RIMKLAQ8IXN7 391 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 OR2M7Q8NG81 312 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 PRR7Q8TB68 274 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 MTERF3Q96E29 417 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 ELP4Q96EB1 424 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 LCORQ96JN0 433 aaPredicted RBP14.01□□□□□ -0.17
LIG1-219ENST00000600055 VSTM2LQ96N03 204 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 WDR55Q9H6Y2 383 aaPredicted RBP14.01□□□□□ -0.17
LIG1-219ENST00000600055 SACM1LQ9NTJ5 587 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 ASIC5Q9NY37 505 aa14.01□□□□□ -0.17
LIG1-219ENST00000600055 C19orf53Q9UNZ5 99 aaPredicted RBP14.01□□□□□ -0.17
LIG1-219ENST00000600055 GPR55Q9Y2T6 319 aaPredicted RBP14.01□□□□□ -0.17
LIG1-219ENST00000600055 CHCHD2Q9Y6H1 151 aaPredicted RBP14.01□□□□□ -0.17
LIG1-219ENST00000600055 A0A087WV62 115 aa14□□□□□ -0.17
LIG1-219ENST00000600055 NPIPA5E9PKD4 350 aa14□□□□□ -0.17
LIG1-219ENST00000600055 P04436 131 aa14□□□□□ -0.17
LIG1-219ENST00000600055 DRD5P21918 477 aa14□□□□□ -0.17
LIG1-219ENST00000600055 ABCD3P28288 659 aa14□□□□□ -0.17
LIG1-219ENST00000600055 EPHA3P29320 983 aa14□□□□□ -0.17
LIG1-219ENST00000600055 GPC1P35052 558 aa14□□□□□ -0.17
LIG1-219ENST00000600055 PPICP45877 212 aa14□□□□□ -0.17
LIG1-219ENST00000600055 DNASE1L1P49184 302 aa14□□□□□ -0.17
LIG1-219ENST00000600055 MANFP55145 182 aaKnown RBP14□□□□□ -0.17
LIG1-219ENST00000600055 CLDN8P56748 225 aa14□□□□□ -0.17
LIG1-219ENST00000600055 NRG3P56975 720 aa14□□□□□ -0.17
LIG1-219ENST00000600055 SRSF1Q07955 248 aaKnown RBP eCLIP14□□□□□ -0.178e-7■■■■□ 21.6
LIG1-219ENST00000600055 ZNF155Q12901 538 aaPredicted RBP14□□□□□ -0.17
LIG1-219ENST00000600055 CPTPQ5TA50 214 aa14□□□□□ -0.17
LIG1-219ENST00000600055 PRAMEF20Q5VT98 475 aa14□□□□□ -0.17
LIG1-219ENST00000600055 SLC22A10Q63ZE4 541 aa14□□□□□ -0.17
LIG1-219ENST00000600055 BICRALQ6AI39 1079 aa14□□□□□ -0.17
LIG1-219ENST00000600055 FAM47EQ6ZV65 393 aa14□□□□□ -0.17
LIG1-219ENST00000600055 WDR53Q7Z5U6 358 aaPredicted RBP14□□□□□ -0.17
LIG1-219ENST00000600055 SIAH3Q8IW03 269 aa14□□□□□ -0.17
LIG1-219ENST00000600055 OR2L13Q8N349 312 aa14□□□□□ -0.17
LIG1-219ENST00000600055 ZFP62Q8NB50 900 aaPredicted RBP14□□□□□ -0.17
LIG1-219ENST00000600055 LRRC8CQ8TDW0 803 aa14□□□□□ -0.17
LIG1-219ENST00000600055 PAQR8Q8TEZ7 354 aa14□□□□□ -0.17
LIG1-219ENST00000600055 DYDC1Q8WWB3 177 aa14□□□□□ -0.17
LIG1-219ENST00000600055 OMA1Q96E52 524 aa14□□□□□ -0.17
LIG1-219ENST00000600055 ZBED6CLQ96FA7 236 aaPredicted RBP14□□□□□ -0.17
LIG1-219ENST00000600055 PROK2Q9HC23 129 aa14□□□□□ -0.17
LIG1-219ENST00000600055 SLCO1B3Q9NPD5 702 aa14□□□□□ -0.17
LIG1-219ENST00000600055 DDX18Q9NVP1 670 aaKnown RBP14□□□□□ -0.17
LIG1-219ENST00000600055 TAS2R9Q9NYW1 312 aa14□□□□□ -0.17
LIG1-219ENST00000600055 CNOT11Q9UKZ1 510 aaKnown RBP14□□□□□ -0.17
LIG1-219ENST00000600055 NPIPA1Q9UND3 350 aa14□□□□□ -0.17
LIG1-219ENST00000600055 FASNP49327 2511 aaKnown RBP14□□□□□ -0.17
LIG1-219ENST00000600055 CROCCQ5TZA2 2017 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 FRG2CA6NGY1 282 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 ZNF195O14628 629 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 ZNHIT1O43257 154 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 COQ9O75208 318 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 ERN1O75460 977 aaKnown RBP13.99□□□□□ -0.17
LIG1-219ENST00000600055 SLITRK5O94991 958 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 UNC5CO95185 931 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 PSMG1O95456 288 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 ABCB1P08183 1280 aaPredicted RBP13.99□□□□□ -0.17
LIG1-219ENST00000600055 ALDOCP09972 364 aaKnown RBP13.99□□□□□ -0.17
LIG1-219ENST00000600055 CT45A8P0DMV1 189 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 CT45A9P0DMV2 189 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 ZNF24P17028 368 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 PRPS1L1P21108 318 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 RPL3P39023 403 aaKnown RBP13.99□□□□□ -0.17
LIG1-219ENST00000600055 DCAF7P61962 342 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 ELOAQ14241 798 aaKnown RBP13.99□□□□□ -0.17
LIG1-219ENST00000600055 SLC9B1Q4ZJI4 515 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 CT45A2Q5DJT8 189 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 GFRALQ6UXV0 394 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 SLC44A2Q8IWA5 706 aaPredicted RBP13.99□□□□□ -0.17
LIG1-219ENST00000600055 DND1Q8IYX4 353 aaKnown RBP13.99□□□□□ -0.17
LIG1-219ENST00000600055 FBXW8Q8N3Y1 598 aa13.99□□□□□ -0.17
LIG1-219ENST00000600055 OR4N2Q8NGD1 307 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms