RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 SIGLEC11Q96RL6 698 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 FUZQ9BT04 418 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 FTSJ1Q9UET6 329 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 WARS2Q9UGM6 360 aaKnown RBP13.57□□□□□ -0.24
VRK3-217ENST00000599538 PCDHGB1Q9Y5G3 927 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 OR5K4A6NMS3 321 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 FGF17O60258 216 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 SOX14O95416 240 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 NTN1O95631 604 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 LGI1O95970 557 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 ZNF182P17025 639 aaPredicted RBP13.57□□□□□ -0.24
VRK3-217ENST00000599538 ACVR2AP27037 513 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 POU1F1P28069 291 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 C21orf33P30042 268 aaPredicted RBP13.57□□□□□ -0.24
VRK3-217ENST00000599538 PDX1P52945 283 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 SHC2P98077 582 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 TUBA3CQ13748 450 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 SMAD2Q15796 467 aaKnown RBP13.57□□□□□ -0.24
VRK3-217ENST00000599538 DCST1Q5T197 706 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 ABHD13Q7L211 337 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 RASSF5Q8WWW0 418 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 TANKQ92844 425 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 MOAP1Q96BY2 351 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 OCEL1Q9H607 264 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 MAN2C1Q9NTJ4 1040 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 REV1Q9UBZ9 1251 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 PHF11Q9UIL8 331 aa13.57□□□□□ -0.24
VRK3-217ENST00000599538 FAM221BA6H8Z2 402 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 URADA6NGE7 173 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 ZNF99A8MXY4 864 aaPredicted RBP13.56□□□□□ -0.24
VRK3-217ENST00000599538 OR10H3O60404 316 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 TMBIM6P55061 237 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 AQP6Q13520 282 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 MFSD12Q6NUT3 480 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 OOSP2Q86WS3 158 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 P3H2Q8IVL5 708 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 CSNK1A1LQ8N752 337 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 AVL9Q8NBF6 648 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 CDS1Q92903 461 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 ACTRT3Q9BYD9 372 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 ROGDIQ9GZN7 287 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 IL21RQ9HBE5 538 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 MKLN1Q9UL63 735 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 PCDH15Q96QU1 1955 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 DSPPQ9NZW4 1301 aa13.56□□□□□ -0.24
VRK3-217ENST00000599538 A0A0G2JPF8 293 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 ARRDC5A6NEK1 342 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 CLDN24A6NM45 220 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 HNRNPCL2B2RXH8 293 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 HNRNPCL3B7ZW38 293 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 SGK494L7N484 410 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 CYR61O00622 381 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 RGS10O43665 173 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 LCKP06239 509 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 HNRNPCL4P0DMR1 293 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 CPMP14384 443 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 IL9P15248 144 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 CNR2P34972 360 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 CRISP1P54107 249 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 HOXC5Q00444 222 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 NFATC3Q12968 1075 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 DGCR6Q14129 220 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 PGBD2Q6P3X8 592 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 PODNL1Q6PEZ8 512 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 USP53Q70EK8 1073 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 MEX3DQ86XN8 651 aaKnown RBP13.55□□□□□ -0.24
VRK3-217ENST00000599538 SLC9A6Q92581 669 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 THAP11Q96EK4 314 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 ACOT13Q9NPJ3 140 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 DNAAF2Q9NVR5 837 aaKnown RBP13.55□□□□□ -0.24
VRK3-217ENST00000599538 POMT2Q9UKY4 750 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 TMCC3Q9ULS5 477 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 DUSP12Q9UNI6 340 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 COL6A3P12111 3177 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 SPAG17Q6Q759 2223 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 CENPVL1A0A0U1RR11 272 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 A0A1W2PR77 199 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 SH3PXD2BA1X283 911 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 FAM170BA6NMN3 283 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 ZAR1LA6NP61 321 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 SOX1O00570 391 aaPredicted RBP13.55□□□□□ -0.24
VRK3-217ENST00000599538 ZSCAN9O15535 394 aaPredicted RBP13.55□□□□□ -0.24
VRK3-217ENST00000599538 GALR3O60755 368 aaPredicted RBP13.55□□□□□ -0.24
VRK3-217ENST00000599538 MED26O95402 600 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 CTSKP43235 329 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 SH3BGRP55822 239 aaPredicted RBP13.55□□□□□ -0.24
VRK3-217ENST00000599538 DYNC1I2Q13409 638 aaKnown RBP13.55□□□□□ -0.24
VRK3-217ENST00000599538 DUSP5Q16690 384 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 LRIT3Q3SXY7 679 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 ZNF311Q5JNZ3 666 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 CCNJQ5T5M9 372 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 MLIPQ5VWP3 458 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 OR2L13Q8N349 312 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 CLIP4Q8N3C7 705 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 DNAJC22Q8N4W6 341 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 GGHQ92820 318 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 GPA33Q99795 319 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 BTBD2Q9BX70 525 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 GIN1Q9NXP7 522 aa13.55□□□□□ -0.24
VRK3-217ENST00000599538 GPR83Q9NYM4 423 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms