RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 G3V3Y1 287 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 NME2P1O60361 137 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 EDF1O60869 148 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 DIAPH2O60879 1101 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 FBXO45P0C2W1 286 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 CT45A8P0DMV1 189 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 CT45A9P0DMV2 189 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 CCL3P10147 92 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 CD1EP15812 388 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 NME2P22392 152 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 PPICP45877 212 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 ZFP36L2P47974 494 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 AQP5P55064 265 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 MANFP55145 182 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 GPR85P60893 370 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 FOXK1P85037 733 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 GUCY1A3Q02108 690 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 MAPKAPK3Q16644 382 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 PGS1Q32NB8 556 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 CT45A2Q5DJT8 189 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 C6orf163Q5TEZ5 329 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 ZNF324BQ6AW86 544 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 OR4F3Q6IEY1 312 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 CAMKMTQ7Z624 323 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 SULF2Q8IWU5 870 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 CLECL1Q8IZS7 167 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 OR4N2Q8NGD1 307 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 RFWD2Q8NHY2 731 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 ERP27Q96DN0 273 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 GIMAP5Q96F15 307 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 DUSP26Q9BV47 211 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 DPY30Q9C005 99 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 CXorf36Q9H7Y0 433 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 PROK2Q9HC23 129 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 MED4Q9NPJ6 270 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 HPF1Q9NWY4 346 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 NTMQ9P121 344 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 PCDHGB6Q9Y5F9 930 aa13.1□□□□□ -0.31
SHKBP1-217ENST00000598558 CDK2AP1O14519 115 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 C6orf47O95873 294 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 C1QCP02747 245 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 CD46P15529 392 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 DRD5P21918 477 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 MST1P26927 711 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 DGKQP52824 942 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 FBXW4P57775 412 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 PSG6Q00889 435 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 MLC1Q15049 377 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 SPANXN4Q5MJ08 99 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 HLA-DQA1Q5Y7H0 255 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 CGB2Q6NT52 195 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 OPN5Q6U736 354 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 CPSF7Q8N684 471 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 SLC15A4Q8N697 577 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 PSD4Q8NDX1 1056 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 OR10G3Q8NGC4 313 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 OR5M3Q8NGP4 307 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 CEP70Q8NHQ1 597 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 OR5P2Q8WZ92 322 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 SPACA9Q96E40 222 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 ZBED6CLQ96FA7 236 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 C16orf58Q96GQ5 468 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 LCORQ96JN0 433 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 BHLHE41Q9C0J9 482 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 CLMPQ9H6B4 373 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 NPFFR2Q9Y5X5 522 aa13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 CHCHD2Q9Y6H1 151 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-217ENST00000598558 ASPDHA6ND91 283 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 TO15178 435 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 PEX1O43933 1283 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 BCAS2O75934 225 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 RASAL1O95294 804 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 TGDSO95455 350 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 ABCB1P08183 1280 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 ABCD3P28288 659 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 PIGAP37287 484 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 RPL3P39023 403 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 RFC3P40938 356 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 MAP3K8P41279 467 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 PRKAG1P54619 331 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 HBA1P69905 142 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 NTRK2Q16620 822 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 HSP90B2PQ58FF3 399 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 EXOSC6Q5RKV6 272 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 BICRALQ6AI39 1079 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 RTL4Q6ZR62 310 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 GPALPP1Q8IXQ4 340 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 CLEC4FQ8N1N0 589 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 C17orf47Q8NEP4 570 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 NUP43Q8NFH3 380 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 PSMA8Q8TAA3 256 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 SLC22A8Q8TCC7 542 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 TESCQ96BS2 214 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 NTNG2Q96CW9 530 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 FAM120BQ96EK7 910 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 C5orf34Q96MH7 638 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 FRMD6Q96NE9 622 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 BTBD9Q96Q07 612 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 DDX18Q9NVP1 670 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms