RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ZNF780BQ9Y6R6 833 aa18.74■□□□□ 0.59
SHMT1-209ENST00000582653 NINQ8N4C6 2090 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 HSPB2A8KAH6 182 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 TRAPPC6AO75865 159 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 CBX7O95931 251 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 ABCB1P08183 1280 aaPredicted RBP18.73■□□□□ 0.59
SHMT1-209ENST00000582653 IL3P08700 152 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 TMED10P49755 219 aaKnown RBP18.73■□□□□ 0.59
SHMT1-209ENST00000582653 MRPS35P82673 323 aaKnown RBP18.73■□□□□ 0.59
SHMT1-209ENST00000582653 BTKQ06187 659 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 HSPB2Q16082 182 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 PACS2Q86VP3 889 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 CCDC116Q8IYX3 515 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 OR52R1Q8NGF1 315 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 CTHRC1Q96CG8 243 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 GSTO2Q9H4Y5 243 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 ANKRA2Q9H9E1 313 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 FETUBQ9UGM5 382 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 MCM8Q9UJA3 840 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 UTS2RQ9UKP6 389 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 PLLPQ9Y342 182 aa18.73■□□□□ 0.59
SHMT1-209ENST00000582653 INTS1Q8N201 2190 aaKnown RBP18.73■□□□□ 0.59
SHMT1-209ENST00000582653 GNG14A0A1W2PPG7 69 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 C2orf72A6NCS6 295 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 SYT5O00445 386 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 UBFD1O14562 309 aaKnown RBP18.72■□□□□ 0.59
SHMT1-209ENST00000582653 PCDH7O60245 1069 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 NME6O75414 186 aaPredicted RBP18.72■□□□□ 0.59
SHMT1-209ENST00000582653 EPPINO95925 133 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 SHBGP04278 402 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 HPNP05981 417 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 GSTA1P08263 222 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 PCSK2P16519 638 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 KRT15P19012 456 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 MASP1P48740 699 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 RIPPLY3P57055 190 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 RPP38P78345 283 aaKnown RBP18.72■□□□□ 0.59
SHMT1-209ENST00000582653 LCP2Q13094 533 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 MYBPHQ13203 477 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 ARSKQ6UWY0 536 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 SEM1Q6ZVN7 128 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 CCNYL1Q8N7R7 359 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 NTNG2Q96CW9 530 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 TIMP4Q99727 224 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 UBQLN3Q9H347 655 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 PFDN4Q9NQP4 134 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 EHD3Q9NZN3 535 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 DCDC2Q9UHG0 476 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 CFL2Q9Y281 166 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 L3MBTL1Q9Y468 752 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 CCDC168Q8NDH2 2452 aa18.72■□□□□ 0.59
SHMT1-209ENST00000582653 HIVEP1P15822 2718 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 C15orf38-AP3S2A0A0A6YYH1 394 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 G3V2L1 256 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 GNB5O14775 395 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 PPM1BO75688 479 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 NAGAP17050 411 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 EMDP50402 254 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 FOXA1P55317 472 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 PKNOX1P55347 436 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 GBP7Q8N8V2 638 aaPredicted RBP18.71■□□□□ 0.59
SHMT1-209ENST00000582653 C16orf78Q8WTQ4 265 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 EXOSC8Q96B26 276 aaKnown RBP18.71■□□□□ 0.59
SHMT1-209ENST00000582653 OMA1Q96E52 524 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 LCORQ96JN0 433 aaPredicted RBP18.71■□□□□ 0.59
SHMT1-209ENST00000582653 NODALQ96S42 347 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 EBPLQ9BY08 206 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 MID1IP1Q9NPA3 183 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 C15orf41Q9Y2V0 281 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 SLC6A5Q9Y345 797 aa18.71■□□□□ 0.59
SHMT1-209ENST00000582653 F8P00451 2351 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 KDM4EB2RXH2 506 aaPredicted RBP18.7■□□□□ 0.58
SHMT1-209ENST00000582653 CDH16O75309 829 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 ZWINTO95229 277 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 ENO1P06733 434 aaKnown RBP18.7■□□□□ 0.58
SHMT1-209ENST00000582653 CEACAM8P31997 349 aaPredicted RBP18.7■□□□□ 0.58
SHMT1-209ENST00000582653 TIMP3P35625 211 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 PEX19P40855 299 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 SLCO1A2P46721 670 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 CDK9P50750 372 aaKnown RBP18.7■□□□□ 0.58
SHMT1-209ENST00000582653 WNT3P56703 355 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 CRYZQ08257 329 aaKnown RBP18.7■□□□□ 0.58
SHMT1-209ENST00000582653 ACSM2AQ08AH3 577 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 TOMM20Q15388 145 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 SF3B4Q15427 424 aaKnown RBP eCLIP18.7■□□□□ 0.58
SHMT1-209ENST00000582653 ZNF628Q5EBL2 1059 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 ACSM2BQ68CK6 577 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 VASNQ6EMK4 673 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 SH2D5Q6ZV89 423 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 WDR53Q7Z5U6 358 aaPredicted RBP18.7■□□□□ 0.58
SHMT1-209ENST00000582653 TMEM200AQ86VY9 491 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 PM20D2Q8IYS1 436 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 KAT2AQ92830 837 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 HGDQ93099 445 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 HSPBAP1Q96EW2 488 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 C12orf65Q9H3J6 166 aaKnown RBP18.7■□□□□ 0.58
SHMT1-209ENST00000582653 METTL7AQ9H8H3 244 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 ZNF629Q9UEG4 869 aaPredicted RBP18.7■□□□□ 0.58
SHMT1-209ENST00000582653 STK38LQ9Y2H1 464 aa18.7■□□□□ 0.58
SHMT1-209ENST00000582653 UGT2B11O75310 529 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms