RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 FADDQ13158 208 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 SYPL1Q16563 259 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 SPATS1Q496A3 300 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 SFT2D3Q587I9 215 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 ZNF615Q8N8J6 731 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 SLC9A6Q92581 669 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 MS4A4EQ96PG1 132 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 OR8D2Q9GZM6 311 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 ACTR3BQ9P1U1 418 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 PCDHGA8Q9Y5G5 932 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 C9J4A7 227 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 BMP2P12643 396 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 DUSP5Q16690 384 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 RPS26P11Q5JNZ5 115 aaPredicted RBP23.37■■□□□ 1.33
SHMT1-207ENST00000580002 OR10Q1Q8NGQ4 319 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 ACTRT3Q9BYD9 372 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 AP3M1Q9Y2T2 418 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 CLCA3PQ9Y6N3 262 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 CCNYL3P0C7X3 344 aa23.36■■□□□ 1.33
SHMT1-207ENST00000580002 ELAVL1Q15717 326 aaKnown RBP23.36■■□□□ 1.33
SHMT1-207ENST00000580002 ANKFN1Q8N957 763 aa23.36■■□□□ 1.33
SHMT1-207ENST00000580002 SLC2A12Q8TD20 617 aa23.36■■□□□ 1.33
SHMT1-207ENST00000580002 ZNF721Q8TF20 911 aa23.36■■□□□ 1.33
SHMT1-207ENST00000580002 SLC38A5Q8WUX1 472 aa23.36■■□□□ 1.33
SHMT1-207ENST00000580002 WDR77Q9BQA1 342 aaPredicted RBP23.36■■□□□ 1.33
SHMT1-207ENST00000580002 NUDT9Q9BW91 350 aa23.36■■□□□ 1.33
SHMT1-207ENST00000580002 OR10A5Q9H207 317 aa23.36■■□□□ 1.33
SHMT1-207ENST00000580002 WDR54Q9H977 334 aa23.36■■□□□ 1.33
SHMT1-207ENST00000580002 V9GYQ6 96 aa23.36■■□□□ 1.33
SHMT1-207ENST00000580002 ASPMQ8IZT6 3477 aa23.36■■□□□ 1.33
SHMT1-207ENST00000580002 CREG1O75629 220 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 TFPTP0C1Z6 253 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 ARAFP10398 606 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 GALNSP34059 522 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 CRYBA2P53672 197 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 SCARB2Q14108 478 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 EXOSC6Q5RKV6 272 aaKnown RBP23.35■■□□□ 1.33
SHMT1-207ENST00000580002 BHLHB9Q6PI77 547 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 HMGN2P46Q86SG4 172 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 SPATA24Q86W54 205 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 C16orf52Q8NHV5 167 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 MIPOL1Q8TD10 442 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 PIK3R3Q92569 461 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 CDS1Q92903 461 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 RAD21L1Q9H4I0 556 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 CELSR3Q9NYQ7 3312 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 KRT36O76013 467 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 BCHEP06276 602 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 CDK6Q00534 326 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 BIKQ13323 160 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 LCN8Q6JVE9 175 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 CDC73Q6P1J9 531 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 TMEM205Q6UW68 189 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 GALNT15Q8N3T1 639 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 FAM86B1Q8N7N1 296 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 PYDC1Q8WXC3 89 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 NCLNQ969V3 563 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 TMEM19Q96HH6 336 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 PELOQ9BRX2 385 aaKnown RBP23.35■■□□□ 1.33
SHMT1-207ENST00000580002 RSPO3Q9BXY4 272 aaPredicted RBP23.35■■□□□ 1.33
SHMT1-207ENST00000580002 TMEM38AQ9H6F2 299 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 FOLH1BQ9HBA9 442 aa23.35■■□□□ 1.33
SHMT1-207ENST00000580002 LOC101059948A0A1B0GTJ6 334 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 TCRBV5S2A0A599 114 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 MASP2O00187 686 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 IGKV3-11P04433 115 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 MAP3K8P41279 467 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 KHKP50053 298 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 SLC37A1P57057 533 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 MRPS22P82650 360 aaKnown RBP23.34■■□□□ 1.33
SHMT1-207ENST00000580002 NNATQ16517 81 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 C6orf163Q5TEZ5 329 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 C11orf65Q8NCR3 313 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 SLC26A7Q8TE54 656 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 METTL21AQ8WXB1 218 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 RUBCNLQ9H714 662 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 ASCL3Q9NQ33 180 aa23.34■■□□□ 1.33
SHMT1-207ENST00000580002 HEMK1Q9Y5R4 338 aaPredicted RBP23.34■■□□□ 1.33
SHMT1-207ENST00000580002 MRPS18BQ9Y676 258 aaKnown RBP23.34■■□□□ 1.33
SHMT1-207ENST00000580002 GXYLT2A0PJZ3 443 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 RAD1O60671 282 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 SEC24DO94855 1032 aaPredicted RBP23.33■■□□□ 1.33
SHMT1-207ENST00000580002 SLITRK5O94991 958 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 PCGF2P35227 344 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 GPR143P51810 404 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 ZNF155Q12901 538 aaPredicted RBP23.33■■□□□ 1.33
SHMT1-207ENST00000580002 CAMK2BQ13554 666 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 TGIF1Q15583 401 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 CCNJQ5T5M9 372 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 FBXW10Q5XX13 1052 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 LGI4Q8N135 537 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 NFAM1Q8NET5 270 aaPredicted RBP23.33■■□□□ 1.33
SHMT1-207ENST00000580002 OR4N2Q8NGD1 307 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 OR2Y1Q8NGV0 311 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 ADAMTS15Q8TE58 950 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 FBXL20Q96IG2 436 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 A4GALTQ9NPC4 353 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 FBXO34Q9NWN3 711 aa23.33■■□□□ 1.33
SHMT1-207ENST00000580002 FREM2Q5SZK8 3169 aa23.32■■□□□ 1.32
SHMT1-207ENST00000580002 CDRT15L2A8MXV6 281 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms