RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 F8P00451 2351 aa7.46□□□□□ -1.21
VPS53-214ENST00000572607 A0A1B0GTH9 108 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 A0A1W2PS29 197 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 ACOX3O15254 700 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 NPHS1O60500 1241 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 SEC22BO75396 215 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 NADKO95544 446 aaPredicted RBP7.46□□□□□ -1.22
VPS53-214ENST00000572607 CT62P0C5K7 136 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 MYZAPP0CAP1 466 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 CCL3P10147 92 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 DDX5P17844 614 aaKnown RBP7.46□□□□□ -1.22
VPS53-214ENST00000572607 DDCP20711 480 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 ALDH3A1P30838 453 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 NTSP30990 170 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 MPIP34949 423 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 PTGER1P34995 402 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 KRT20P35900 424 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 SERPINB5P36952 375 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 MASP1P48740 699 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 DNASE1L1P49184 302 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 RAE1P78406 368 aaKnown RBP7.46□□□□□ -1.22
VPS53-214ENST00000572607 PLCXD2Q0VAA5 305 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 NTRK2Q16620 822 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 PRICKLE4Q2TBC4 344 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 ZNF791Q3KP31 576 aaPredicted RBP7.46□□□□□ -1.22
VPS53-214ENST00000572607 CMPK2Q5EBM0 449 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 PRAMEF20Q5VT98 475 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 TMEM198Q66K66 360 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 CLEC6AQ6EIG7 209 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 FAM111BQ6SJ93 734 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 LINC00114Q6XXX2 140 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 Q6ZPB1 254 aaPredicted RBP7.46□□□□□ -1.22
VPS53-214ENST00000572607 IKBIPQ70UQ0 350 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 MRGPRGQ86SM5 289 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 DDIASQ8IXT1 998 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 FAM9CQ8IZT9 166 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 MMP21Q8N119 569 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 FBXW8Q8N3Y1 598 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 LIX1Q8N485 282 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 ZNF808Q8N4W9 903 aaPredicted RBP7.46□□□□□ -1.22
VPS53-214ENST00000572607 ZNF615Q8N8J6 731 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 ZNF441Q8N8Z8 693 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 C17orf47Q8NEP4 570 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 ADCY4Q8NFM4 1077 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 OR10G3Q8NGC4 313 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 OR52R1Q8NGF1 315 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 OR5M3Q8NGP4 307 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 ZNF675Q8TD23 568 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 TCP10LQ8TDR4 215 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 PAQR8Q8TEZ7 354 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 DIO2Q92813 273 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 ERP27Q96DN0 273 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 HSPBAP1Q96EW2 488 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 CCDC120Q96HB5 630 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 METTL2AQ96IZ6 378 aaKnown RBP7.46□□□□□ -1.22
VPS53-214ENST00000572607 ZNF597Q96LX8 424 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 JSRP1Q96MG2 331 aaPredicted RBP7.46□□□□□ -1.22
VPS53-214ENST00000572607 DOHHQ9BU89 302 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 TMEM109Q9BVC6 243 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 ITPAQ9BY32 194 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 DEFB127Q9H1M4 99 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 CENPHQ9H3R5 247 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 LDAHQ9H6V9 325 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 RUBCNLQ9H714 662 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 LRTM1Q9HBL6 345 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 SLC35C2Q9NQQ7 365 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 DEPPQ9NTK1 212 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 MAT2BQ9NZL9 334 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 HEY2Q9UBP5 337 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 TINAGQ9UJW2 476 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 ZNF835Q9Y2P0 537 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 NPFFR2Q9Y5X5 522 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.46□□□□□ -1.22
VPS53-214ENST00000572607 POLQO75417 2590 aa7.46□□□□□ -1.22
VPS53-214ENST00000572607 POLEQ07864 2286 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 DCHS2Q6V1P9 2916 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 A0A0G2JMM0 328 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 ATP6AP2A0A1C7CYW4 349 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 A0A1W2PPB8 328 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 A0A1W2PRS3 328 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 PINLYPA6NC86 204 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 KIR3DP1A8MWS1 328 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 PRSS44E7EML9 344 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 CTIFO43310 598 aaKnown RBP7.45□□□□□ -1.22
VPS53-214ENST00000572607 ZNF354AO60765 605 aaPredicted RBP7.45□□□□□ -1.22
VPS53-214ENST00000572607 COQ9O75208 318 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 ERLIN1O75477 346 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 ATP6AP2O75787 350 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 PDE9AO76083 593 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 SLITRK5O94991 958 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 SNX4O95219 450 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 CLPSP04118 112 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 NAGAP17050 411 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 HOXB4P17483 251 aaPredicted RBP7.45□□□□□ -1.22
VPS53-214ENST00000572607 GPX3P22352 226 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 PRPH2P23942 346 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 MAPK1P28482 360 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 PIGAP37287 484 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 MAN2A2P49641 1150 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 NCBP2P52298 156 aaKnown RBP eCLIP7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms