RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 FAIMQ9NVQ4 179 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 B3GALT5Q9Y2C3 310 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 SNX8Q9Y5X2 465 aa16.2■□□□□ 0.18
CLK3-227ENST00000570296 USF1P22415 310 aaPredicted RBP16.19■□□□□ 0.18
CLK3-227ENST00000570296 TLX1P31314 330 aaPredicted RBP16.19■□□□□ 0.18
CLK3-227ENST00000570296 SSTR4P31391 388 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 DEKP35659 375 aaKnown RBP16.19■□□□□ 0.18
CLK3-227ENST00000570296 HNMTP50135 292 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 SARNPP82979 210 aaKnown RBP16.19■□□□□ 0.18
CLK3-227ENST00000570296 LSM11P83369 360 aaKnown RBP eCLIP16.19■□□□□ 0.18
CLK3-227ENST00000570296 ZNF844Q08AG5 666 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 AP5B1Q2VPB7 878 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 UBQLNLQ8IYU4 475 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 C3orf56Q8N813 242 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 FNDC9Q8TBE3 224 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 LCORQ96JN0 433 aaPredicted RBP16.19■□□□□ 0.18
CLK3-227ENST00000570296 NODALQ96S42 347 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 FAM167BQ9BTA0 163 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 PINK1Q9BXM7 581 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 CAPS2Q9BXY5 557 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 MANSC1Q9H8J5 431 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 NGBQ9NPG2 151 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 ZNF281Q9Y2X9 895 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 EMC9Q9Y3B6 208 aa16.19■□□□□ 0.18
CLK3-227ENST00000570296 UQCRHLA0A096LP55 91 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 LOC100289279A0A1B0GTE1 492 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 TCRBV7S3A2A0A539 114 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 RTCAO00442 366 aaKnown RBP16.18■□□□□ 0.18
CLK3-227ENST00000570296 WDR47O94967 919 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 GPR75O95800 540 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 FCGR2AP12318 317 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 PSMB1P20618 241 aaKnown RBP16.18■□□□□ 0.18
CLK3-227ENST00000570296 CDKL1Q00532 357 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 TNFRSF17Q02223 184 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 TMEM35AQ53FP2 167 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 GPSM1Q86YR5 675 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 VSTM4Q8IW00 320 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 CCDC170Q8IYT3 715 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 FAM168AQ92567 244 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 SERPINB12Q96P63 405 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 TRIM2Q9C040 744 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 EML4Q9HC35 981 aaKnown RBP16.18■□□□□ 0.18
CLK3-227ENST00000570296 DNAJC11Q9NVH1 559 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 GPRC5BQ9NZH0 403 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 DKKL1Q9UK85 242 aa16.18■□□□□ 0.18
CLK3-227ENST00000570296 ZNF490Q9ULM2 529 aaPredicted RBP16.18■□□□□ 0.18
CLK3-227ENST00000570296 PACSIN2Q9UNF0 486 aaPredicted RBP16.18■□□□□ 0.18
CLK3-227ENST00000570296 PRAMEF25A6NGN4 478 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 AKR1B15C9JRZ8 316 aaPredicted RBP16.17■□□□□ 0.18
CLK3-227ENST00000570296 CBFA2T2O43439 604 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 KIAA0513O60268 411 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 AIFM1O95831 613 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 SSR2P43308 183 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 CLDN15P56746 228 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 B3GALT5-AS1P59052 145 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 PDAP1Q13442 181 aaKnown RBP16.17■□□□□ 0.18
CLK3-227ENST00000570296 PON3Q15166 354 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 PRR31Q5SQ13 230 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 RBM20Q5T481 1227 aaKnown RBP16.17■□□□□ 0.18
CLK3-227ENST00000570296 BEND4Q6ZU67 534 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 GPR180Q86V85 440 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 ZNF615Q8N8J6 731 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 GBP7Q8N8V2 638 aaPredicted RBP16.17■□□□□ 0.18
CLK3-227ENST00000570296 STEAP2Q8NFT2 490 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 KBTBD8Q8NFY9 601 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 PDLIM5Q96HC4 596 aaKnown RBP16.17■□□□□ 0.18
CLK3-227ENST00000570296 MS4A8Q9BY19 250 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 CXorf21Q9HAI6 301 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 PHF11Q9UIL8 331 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 FBXL2Q9UKC9 423 aa16.17■□□□□ 0.18
CLK3-227ENST00000570296 ZIC3O60481 467 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 SLC35E2BP0CK96 405 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 SLC35E2P0CK97 266 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 IL11P20809 199 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 CNTFP26441 200 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 DEFA6Q01524 100 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 SLAMF1Q13291 335 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 HSP90AA5PQ58FG0 334 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 ALKBH2Q6NS38 261 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 ZNF525Q8N782 197 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 C2CD4AQ8NCU7 369 aaPredicted RBP16.16■□□□□ 0.18
CLK3-227ENST00000570296 C10orf105Q8TEF2 133 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 EGFL8Q99944 293 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 NXF5Q9H1B4 397 aaKnown RBP16.16■□□□□ 0.18
CLK3-227ENST00000570296 OR10A5Q9H207 317 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 IKZF3Q9UKT9 509 aa16.16■□□□□ 0.18
CLK3-227ENST00000570296 NBEAL2Q6ZNJ1 2754 aa16.15■□□□□ 0.18
CLK3-227ENST00000570296 SDR42E2A6NKP2 422 aa16.15■□□□□ 0.18
CLK3-227ENST00000570296 CSF3P09919 207 aa16.15■□□□□ 0.18
CLK3-227ENST00000570296 PTMSP20962 102 aa16.15■□□□□ 0.18
CLK3-227ENST00000570296 GPX3P22352 226 aa16.15■□□□□ 0.18
CLK3-227ENST00000570296 BUD31P41223 144 aaPredicted RBP16.15■□□□□ 0.18
CLK3-227ENST00000570296 GDF5P43026 501 aa16.15■□□□□ 0.18
CLK3-227ENST00000570296 NEK2P51955 445 aa16.15■□□□□ 0.18
CLK3-227ENST00000570296 IRX1P78414 480 aaPredicted RBP16.15■□□□□ 0.18
CLK3-227ENST00000570296 HMGCS1Q01581 520 aa16.15■□□□□ 0.18
CLK3-227ENST00000570296 AGAP6Q5VW22 663 aa16.15■□□□□ 0.18
CLK3-227ENST00000570296 C18orf63Q68DL7 685 aa16.15■□□□□ 0.18
CLK3-227ENST00000570296 DESI1Q6ICB0 168 aa16.15■□□□□ 0.18
CLK3-227ENST00000570296 S100PBPQ96BU1 408 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms