RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MMABQ96EY8 250 aaPredicted RBP7.47□□□□□ -1.21
VPS39-213ENST00000570062 VPS50Q96JG6 964 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 ZNF354BQ96LW1 612 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 DGAT2Q96PD7 388 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 EPYCQ99645 322 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 CIB1Q99828 191 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 YTHDF1Q9BYJ9 559 aaKnown RBP7.47□□□□□ -1.21
VPS39-213ENST00000570062 TRIM4Q9C037 500 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 POLR2J2Q9GZM3 115 aaKnown RBP7.47□□□□□ -1.21
VPS39-213ENST00000570062 POLR2J3Q9H1A7 115 aaKnown RBP7.47□□□□□ -1.21
VPS39-213ENST00000570062 SEMA6AQ9H2E6 1030 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 OR51I1Q9H343 314 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 PIGUQ9H490 435 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 CAAP1Q9H8G2 361 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 COQ10BQ9H8M1 238 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 ZNF304Q9HCX3 659 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 MKKSQ9NPJ1 570 aaPredicted RBP7.47□□□□□ -1.21
VPS39-213ENST00000570062 PRTFDC1Q9NRG1 225 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 SMPD3Q9NY59 655 aaPredicted RBP7.47□□□□□ -1.21
VPS39-213ENST00000570062 USE1Q9NZ43 259 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 SEC14L3Q9UDX4 400 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 PRODH2Q9UF12 536 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 MRTO4Q9UKD2 239 aaKnown RBP7.47□□□□□ -1.21
VPS39-213ENST00000570062 SLC9A8Q9Y2E8 581 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 ANKRD12Q6UB98 2062 aa7.47□□□□□ -1.21
VPS39-213ENST00000570062 CHD8Q9HCK8 2581 aa7.46□□□□□ -1.21
VPS39-213ENST00000570062 A0A0A6YYC8 382 aaPredicted RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 A0A1B0GX78 115 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 PRR33A8MZF0 331 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 I3L1I5 382 aaPredicted RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 UPK1AO00322 258 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 SYT5O00445 386 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 HMGN4O00479 90 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 FOXS1O43638 330 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 KIF1CO43896 1103 aaKnown RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 PRAMEF2O60811 474 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 RDH16O75452 317 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 DNAJB5O75953 348 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 LDOC1O95751 146 aaPredicted RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 ONECUT2O95948 504 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 B3GALT4O96024 378 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 ALBP02768 609 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 SEMG1P04279 462 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 EFNA1P20827 205 aaPredicted RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 ENDOUP21128 410 aaKnown RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 FPR1P21462 350 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 LCN1P31025 176 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 MPLP40238 635 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 STT3AP46977 705 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 HMGA2P52926 109 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 PSMD4P55036 377 aaKnown RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 GFERP55789 205 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 DCAF7P61962 342 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 PPP1CAP62136 330 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 SHC2P98077 582 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 E2F1Q01094 437 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 MERTKQ12866 999 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 SRSF5Q13243 272 aaKnown RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 IL18R1Q13478 541 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 LASP1Q14847 261 aaKnown RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 LARS2Q15031 903 aaKnown RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 PRSS53Q2L4Q9 553 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 ARHGAP11BQ3KRB8 267 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 EIPR1Q53HC9 387 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 COX20Q5RI15 118 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 NKAIN2Q5VXU1 208 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 LAIR1Q6GTX8 287 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 HEPHL1Q6MZM0 1159 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 HMBOX1Q6NT76 420 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 MFSD12Q6NUT3 480 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 TNFAIP8L2Q6P589 184 aaPredicted RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 ENPP6Q6UWR7 440 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 QSOX2Q6ZRP7 698 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 ARHGAP22Q7Z5H3 698 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 GALNT12Q8IXK2 581 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 PEX5LQ8IYB4 626 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 MMP21Q8N119 569 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 CBR4Q8N4T8 237 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 DHRSXQ8N5I4 330 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 EID2Q8N6I1 236 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 ZNF555Q8NEP9 628 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 OR9A2Q8NGT5 310 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 OR51Q1Q8NH59 317 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 RIT1Q92963 219 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 SLC35B4Q969S0 331 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 TMBIM1Q969X1 311 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 CTHRC1Q96CG8 243 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 TMEM19Q96HH6 336 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 TPD52L3Q96J77 140 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 HSH2DQ96JZ2 352 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 OR7D2Q96RA2 312 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 GFM1Q96RP9 751 aaKnown RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 TREX2Q9BQ50 279 aaPredicted RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 G6PC3Q9BUM1 346 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 PINK1Q9BXM7 581 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 ALOXE3Q9BYJ1 711 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 TGIF2Q9GZN2 237 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 GABARAPL1Q9H0R8 117 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 FGF21Q9NSA1 209 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 C14orf105Q9NVL8 296 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms