RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 BIKQ13323 160 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 DOC2AQ14183 400 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 PGGHGQ32M88 737 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 MSS51Q4VC12 460 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 LIPNQ5VXI9 398 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 ARMC3Q5W041 872 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 CYB5R2Q6BCY4 276 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 OR5M10Q6IEU7 315 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 ADAM5Q6NVV9 412 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 C12orf54Q6X4T0 127 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 ATG4DQ86TL0 474 aaPredicted RBP10.56□□□□□ -0.72
CLK3-222ENST00000568232 SYCE1Q8N0S2 351 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 ZNF615Q8N8J6 731 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 C7orf57Q8NEG2 295 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 OR10H5Q8NGA6 315 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 FNDC9Q8TBE3 224 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 ESAMQ96AP7 390 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 VPS39Q96JC1 886 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 PINK1Q9BXM7 581 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 MS4A8Q9BY19 250 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 NXF5Q9H1B4 397 aaKnown RBP10.56□□□□□ -0.72
CLK3-222ENST00000568232 CHODLQ9H9P2 273 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 L2HGDHQ9H9P8 463 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 RNF122Q9H9V4 155 aa10.56□□□□□ -0.72
CLK3-222ENST00000568232 PTBP2Q9UKA9 531 aaKnown RBP10.56□□□□□ -0.72
CLK3-222ENST00000568232 A0A1W2PP18 115 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 NCF1BA6NI72 391 aaPredicted RBP10.55□□□□□ -0.72
CLK3-222ENST00000568232 NCF1CA8MVU1 366 aaPredicted RBP10.55□□□□□ -0.72
CLK3-222ENST00000568232 ZIC3O60481 467 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 CDH16O75309 829 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 PPM1BO75688 479 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 GPR75O95800 540 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 CCDC175P0C221 793 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 RHOXF2BP0C7M4 288 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 IGHV4-31P0DP07 118 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 NCF1P14598 390 aaPredicted RBP10.55□□□□□ -0.72
CLK3-222ENST00000568232 KRT15P19012 456 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 SRD5A2P31213 254 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 SUCLG1P53597 346 aaKnown RBP10.55□□□□□ -0.72
CLK3-222ENST00000568232 TNFRSF17Q02223 184 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 LOXL1Q08397 574 aaPredicted RBP10.55□□□□□ -0.72
CLK3-222ENST00000568232 ZNF844Q08AG5 666 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 KIF5AQ12840 1032 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 GUSBP1Q15486 140 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 FAM120AOSQ5T036 256 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 RAD9BQ6WBX8 426 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 GPR180Q86V85 440 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 RNF175Q8N4F7 328 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 SRFBP1Q8NEF9 429 aaKnown RBP10.55□□□□□ -0.72
CLK3-222ENST00000568232 ZNF473Q8WTR7 871 aaKnown RBP10.55□□□□□ -0.72
CLK3-222ENST00000568232 RHBDF1Q96CC6 855 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 PDLIM5Q96HC4 596 aaKnown RBP10.55□□□□□ -0.72
CLK3-222ENST00000568232 SIGLEC10Q96LC7 697 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 ACTR6Q9GZN1 396 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 PITHD1Q9GZP4 211 aaPredicted RBP10.55□□□□□ -0.72
CLK3-222ENST00000568232 OR10A5Q9H207 317 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 OR51B5Q9H339 312 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 CXorf21Q9HAI6 301 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 PRM3Q9NNZ6 103 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 MOCS1Q9NZB8 636 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 RNF115Q9Y4L5 304 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 PKD1L1Q8TDX9 2849 aa10.55□□□□□ -0.72
CLK3-222ENST00000568232 C17orf51A8MQB3 221 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 B4DXG7 233 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 TAPBPO15533 448 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 UGT2B11O75310 529 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 AIFM1O95831 613 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 MLNP12872 115 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 GPX3P22352 226 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 MAGEA6P43360 314 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 HNMTP50135 292 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 NEK2P51955 445 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 B3GALT5-AS1P59052 145 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 CDKL1Q00532 357 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 PON3Q15166 354 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 BCL2A1Q16548 175 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 CTU2Q2VPK5 515 aaKnown RBP10.54□□□□□ -0.72
CLK3-222ENST00000568232 ZNF672Q499Z4 452 aaPredicted RBP10.54□□□□□ -0.72
CLK3-222ENST00000568232 OR4C11Q6IEV9 310 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 TMEM81Q6P7N7 255 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 DRICH1Q6PGQ1 229 aaPredicted RBP10.54□□□□□ -0.72
CLK3-222ENST00000568232 FAM214BQ7L5A3 538 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 NUP54Q7Z3B4 507 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 MEX3DQ86XN8 651 aaKnown RBP10.54□□□□□ -0.72
CLK3-222ENST00000568232 PLCZ1Q86YW0 608 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.54□□□□□ -0.72
CLK3-222ENST00000568232 KBTBD8Q8NFY9 601 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 HTRA1Q92743 480 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 PTCD3Q96EY7 689 aaKnown RBP10.54□□□□□ -0.72
CLK3-222ENST00000568232 C11orf24Q96F05 449 aaPredicted RBP10.54□□□□□ -0.72
CLK3-222ENST00000568232 PELOQ9BRX2 385 aaKnown RBP10.54□□□□□ -0.72
CLK3-222ENST00000568232 TMEM79Q9BSE2 394 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 TRAF4Q9BUZ4 470 aaPredicted RBP10.54□□□□□ -0.72
CLK3-222ENST00000568232 MANSC1Q9H8J5 431 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 BARX1Q9HBU1 254 aaPredicted RBP10.54□□□□□ -0.72
CLK3-222ENST00000568232 PLSCR4Q9NRQ2 329 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 MS4A12Q9NXJ0 267 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 DKKL1Q9UK85 242 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 B3GALT5Q9Y2C3 310 aa10.54□□□□□ -0.72
CLK3-222ENST00000568232 VWA7Q9Y334 891 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms