RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 NQO1P15559 274 aaKnown RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 LBPP18428 481 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 FUT1P19526 365 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 UGT1A1P22309 533 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 NTSR1P30989 418 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 OTX1P32242 354 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 MAS1LP35410 378 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 FRKP42685 505 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 BTDP43251 543 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 CSNK1EP49674 416 aaKnown RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 VEGFCP49767 419 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 CDH15P55291 814 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 MAGOHP61326 146 aaKnown RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 ERVK-8P63133 956 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 CSNK2A1P68400 391 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 TXNL4AP83876 142 aaKnown RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 STX4Q12846 297 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 EIF4EBP2Q13542 120 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 ENPP2Q13822 863 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 PTGR1Q14914 329 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 SLC17A1Q14916 467 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 SLC15A2Q16348 729 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 XKR6Q5GH73 641 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 FAM46CQ5VWP2 391 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 FRMPD2BQ6IN97 320 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 ZSCAN25Q6NSZ9 544 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 CLEC18BQ6UXF7 455 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 WDR88Q6ZMY6 472 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 FAM92BQ6ZTR7 304 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 MYPOPQ86VE0 399 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 ZNF410Q86VK4 478 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 KLBQ86Z14 1044 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 CTAGE3PQ8IX95 158 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 C11orf44Q8N8P7 122 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 RASGEF1AQ8N9B8 481 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 CAMKVQ8NCB2 501 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 CLEC18CQ8NCF0 446 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 CCDC54Q8NEL0 328 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 CSNK2A3Q8NEV1 391 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 OR7G3Q8NG95 312 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 OR5M8Q8NGP6 311 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 MBD3L2Q8NHZ7 208 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 OSR1Q8TAX0 266 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 MAGEE2Q8TD90 523 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 OIT3Q8WWZ8 545 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 CACNG8Q8WXS5 425 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 HSD17B8Q92506 261 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 TOP1MTQ969P6 601 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 NSL1Q96IY1 281 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 PPP3R2Q96LZ3 170 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 DGAT2Q96PD7 388 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 PARK7Q99497 189 aaKnown RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 TMEM47Q9BQJ4 181 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 TMEM246Q9BRR3 403 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 FUZQ9BT04 418 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 ALKBH7Q9BT30 221 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 MED10Q9BTT4 135 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 HINT2Q9BX68 163 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 ANKRD60Q9BZ19 345 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 ROGDIQ9GZN7 287 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 ZNF350Q9GZX5 532 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 RAB1BQ9H0U4 201 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 TP63Q9H3D4 680 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 TMEM185BQ9H7F4 350 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 NOL11Q9H8H0 719 aaKnown RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 AKIRIN1Q9H9L7 192 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 LRRC4Q9HBW1 653 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 HEYLQ9NQ87 328 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 BIN3Q9NQY0 253 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 TEX10Q9NXF1 929 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 P4HTMQ9NXG6 502 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 PLK2Q9NYY3 685 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 VAPAQ9P0L0 249 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 KLHL13Q9P2N7 655 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 MLXQ9UH92 298 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 SCML1Q9UN30 329 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 COPS3Q9UNS2 423 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 EXOGQ9Y2C4 368 aaKnown RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 PTRH2Q9Y3E5 179 aaKnown RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 RHBDD3Q9Y3P4 386 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 ALG5Q9Y673 324 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 ZHX2Q9Y6X8 837 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 NCOA1Q15788 1441 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 ABCC4O15439 1325 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 SNAPC4Q5SXM2 1469 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 ABCC10Q5T3U5 1492 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 FAM240BA0A1B0GVZ2 78 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 ANKDD1BA6NHY2 528 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 EFCAB7A8K855 629 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 SERPINE3A8MV23 424 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 H3BQ06 376 aaPredicted RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 CLIC1O00299 241 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 FOXE1O00358 373 aaPredicted RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 SSX4O60224 188 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 NME2P1O60361 137 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 SNNO75324 88 aaPredicted RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 SAP30O75446 220 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 SRP72O76094 671 aaKnown RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 IFNGP01579 166 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 TMEM225BP0DP42 221 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms