RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 OMA1Q96E52 524 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 WDYHV1Q96HA8 205 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 TMEM41AQ96HV5 264 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 TRIB1Q96RU8 372 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 NODALQ96S42 347 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 SECISBP2Q96T21 854 aaKnown RBP10.62□□□□□ -0.71
USP3-220ENST00000561381 PAFAH2Q99487 392 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 FUT8Q9BYC5 575 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 CLEC4MQ9H2X3 399 aaPredicted RBP10.62□□□□□ -0.71
USP3-220ENST00000561381 ELOVL6Q9H5J4 265 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 GALNT9Q9HCQ5 603 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 AHSPQ9NZD4 102 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 MAT2BQ9NZL9 334 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 EHD3Q9NZN3 535 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 BCAP29Q9UHQ4 241 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 ST6GALNAC2Q9UJ37 374 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 ZNF225Q9UK10 706 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 PLEKHA6Q9Y2H5 1048 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 PLLPQ9Y342 182 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 IKBKGQ9Y6K9 419 aa10.62□□□□□ -0.71
USP3-220ENST00000561381 ANKHD1Q8IWZ3 2542 aaKnown RBP10.62□□□□□ -0.71
USP3-220ENST00000561381 DOCK7Q96N67 2140 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 A8MT66 165 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 POC1B-GALNT4F8VUJ3 575 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 SMIM24O75264 130 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 UGT2B11O75310 529 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 PPM1BO75688 479 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 KRT38O76015 456 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 CBX7O95931 251 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 IL2RAP01589 272 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 ATP1B1P05026 303 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 INHBAP08476 426 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 PCSK2P16519 638 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 KRT15P19012 456 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 CNTFP26441 200 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 DEKP35659 375 aaKnown RBP10.61□□□□□ -0.71
USP3-220ENST00000561381 CKAP4Q07065 602 aaKnown RBP10.61□□□□□ -0.71
USP3-220ENST00000561381 MAP4K2Q12851 820 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 CEBPEQ15744 281 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 FBXL19-AS1Q494R0 122 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 FLYWCH1Q4VC44 716 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 TRMT12Q53H54 448 aaKnown RBP10.61□□□□□ -0.71
USP3-220ENST00000561381 NHSL2Q5HYW2 709 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 TCHHL1Q5QJ38 904 aaPredicted RBP10.61□□□□□ -0.71
USP3-220ENST00000561381 C6orf163Q5TEZ5 329 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 PLXDC2Q6UX71 529 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 ANGPTL8Q6UXH0 198 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 CDC20BQ86Y33 519 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 RELL1Q8IUW5 271 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 PM20D2Q8IYS1 436 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 TMEM151AQ8N4L1 468 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 FAM83FQ8NEG4 500 aaPredicted RBP10.61□□□□□ -0.71
USP3-220ENST00000561381 OR52R1Q8NGF1 315 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 OR1J4Q8NGS1 313 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 ZNF483Q8TF39 744 aaPredicted RBP10.61□□□□□ -0.71
USP3-220ENST00000561381 DCAKDQ8WVC6 231 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 SELENOMQ8WWX9 145 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 ABTB1Q969K4 478 aaPredicted RBP10.61□□□□□ -0.71
USP3-220ENST00000561381 CNRIP1Q96F85 164 aaPredicted RBP10.61□□□□□ -0.71
USP3-220ENST00000561381 FOXC2Q99958 501 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 CXXC4Q9H2H0 198 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 METTL7AQ9H8H3 244 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 ANKRA2Q9H9E1 313 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 ZNF629Q9UEG4 869 aaPredicted RBP10.61□□□□□ -0.71
USP3-220ENST00000561381 DMGDHQ9UI17 866 aaKnown RBP10.61□□□□□ -0.71
USP3-220ENST00000561381 ZNF639Q9UID6 485 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 CBLCQ9ULV8 474 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 MAPRE3Q9UPY8 281 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 ITPR3Q14573 2671 aa10.61□□□□□ -0.71
USP3-220ENST00000561381 C1orf226A1L170 272 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 MBD3L4A6NDZ8 208 aaPredicted RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 MBD3L3A6NE82 208 aaPredicted RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 MBD3L5A6NJ08 208 aaPredicted RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 CD8B2A6NJW9 211 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 A6NNC1 897 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 TRIM49D1C9J1S8 452 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 ICOSLGO75144 302 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 OR4F21O95013 312 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 OTCP00480 354 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 CD99P14209 185 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 CHN1P15882 459 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 CSNK2A2P19784 350 aaPredicted RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 TACR1P25103 407 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 SLCO1A2P46721 670 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 ALDH9A1P49189 494 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 EMDP50402 254 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 RPP38P78345 283 aaKnown RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 MRPS35P82673 323 aaKnown RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 PLCXD2Q0VAA5 305 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 TSNAXIP1Q2TAA8 658 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 C10orf62Q5T681 223 aaPredicted RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 C1orf52Q8N6N3 182 aaKnown RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 WDSUB1Q8N9V3 476 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 C9orf106Q8NAJ2 232 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 MBD3L2Q8NHZ7 208 aaPredicted RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 LINC01560Q8TB33 94 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 RDH11Q8TC12 318 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 TRPC4APQ8TEL6 797 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 FAM222BQ8WU58 562 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 NINJ1Q92982 152 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms