RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CEP112Q8N8E3 955 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 TNIP2Q8NFZ5 429 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 KAT2AQ92830 837 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 EXOSC8Q96B26 276 aaKnown RBP9.35□□□□□ -0.91
LDLR-214ENST00000560628 OMA1Q96E52 524 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 APIPQ96GX9 242 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 LCORQ96JN0 433 aaPredicted RBP9.35□□□□□ -0.91
LDLR-214ENST00000560628 KCNA7Q96RP8 456 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 NODALQ96S42 347 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 ZNF382Q96SR6 550 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 SECISBP2Q96T21 854 aaKnown RBP9.35□□□□□ -0.91
LDLR-214ENST00000560628 ACPTQ9BZG2 426 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 RYDENQ9NUL5 291 aaKnown RBP9.35□□□□□ -0.91
LDLR-214ENST00000560628 CAMK2AQ9UQM7 478 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 CFL2Q9Y281 166 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 C15orf41Q9Y2V0 281 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 HCFC1P51610 2035 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 PDZD2O15018 2839 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 FREM3P0C091 2139 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 GNG14A0A1W2PPG7 69 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 AHRRA9YTQ3 701 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 FAM47E-STBD1D6RA91 191 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 PCDH7O60245 1069 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 ICOSLGO75144 302 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 UGT2B11O75310 529 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 REM1O75628 298 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 EPPINO95925 133 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 HPNP05981 417 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 HSD3B1P14060 373 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 NAGAP17050 411 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 BMP7P18075 431 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 DRD5P21918 477 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 HSD3B2P26439 372 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 PPICP45877 212 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 EMDP50402 254 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 CRYZQ08257 329 aaKnown RBP9.34□□□□□ -0.91
LDLR-214ENST00000560628 ACSM2AQ08AH3 577 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 PLCXD2Q0VAA5 305 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 CSTF3Q12996 717 aaKnown RBP9.34□□□□□ -0.91
LDLR-214ENST00000560628 ACSF3Q4G176 576 aaPredicted RBP9.34□□□□□ -0.91
LDLR-214ENST00000560628 SPDYAQ5MJ70 313 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 CES4AQ5XG92 561 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 ACSM2BQ68CK6 577 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 TIGD3Q6B0B8 471 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 VASNQ6EMK4 673 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 ARSKQ6UWY0 536 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 SLC22A9Q8IVM8 553 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 GSPT2Q8IYD1 628 aaKnown RBP9.34□□□□□ -0.91
LDLR-214ENST00000560628 C17orf47Q8NEP4 570 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 OR1J4Q8NGS1 313 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 OR9A2Q8NGT5 310 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 RDH11Q8TC12 318 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 C16orf78Q8WTQ4 265 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 NRGNQ92686 78 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 HGDQ93099 445 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 TMBIM1Q969X1 311 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 CTHRC1Q96CG8 243 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 HSPBAP1Q96EW2 488 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 TMEM41AQ96HV5 264 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 EBPLQ9BY08 206 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 TXLNGYQ9BZA5 131 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 EPB41L4BQ9H329 900 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 UBQLN3Q9H347 655 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 GALNT9Q9HCQ5 603 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 SERHLQ9NQF3 203 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 PRODH2Q9UF12 536 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 MCM8Q9UJA3 840 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 MAPRE3Q9UPY8 281 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 CSMD1Q96PZ7 3565 aa9.34□□□□□ -0.91
LDLR-214ENST00000560628 HSPB2A8KAH6 182 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 KIF2AO00139 706 aaPredicted RBP9.33□□□□□ -0.92
LDLR-214ENST00000560628 UBFD1O14562 309 aaKnown RBP9.33□□□□□ -0.92
LDLR-214ENST00000560628 ACOX3O15254 700 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 DRD2P14416 443 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 BMP5P22003 454 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 PTPN6P29350 595 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 UQCRC1P31930 480 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 PTGDSP41222 190 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 AGFG1P52594 562 aaKnown RBP9.33□□□□□ -0.92
LDLR-214ENST00000560628 NAGLUP54802 743 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 FOXA1P55317 472 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 PKNOX1P55347 436 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 C2orf80Q0P641 193 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 LCP2Q13094 533 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 HSPB2Q16082 182 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 PRSS53Q2L4Q9 553 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 SLC25A35Q3KQZ1 300 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 ZNF628Q5EBL2 1059 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 DCST1Q5T197 706 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 SLC30A6Q6NXT4 461 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 LCA5Q86VQ0 697 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 TMEM200AQ86VY9 491 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 GBP7Q8N8V2 638 aaPredicted RBP9.33□□□□□ -0.92
LDLR-214ENST00000560628 NAXEQ8NCW5 288 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 LRRN4CLQ8ND94 238 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 FAM83FQ8NEG4 500 aaPredicted RBP9.33□□□□□ -0.92
LDLR-214ENST00000560628 CDC26Q8NHZ8 85 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 ACMSDQ8TDX5 336 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 MZB1Q8WU39 189 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 ABTB1Q969K4 478 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms