RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 NPSR1Q6W5P4 371 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 TMEM64Q6YI46 380 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 ASB18Q6ZVZ8 466 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 WDR53Q7Z5U6 358 aaPredicted RBP20.15■□□□□ 0.82
SNX1-210ENST00000560260 CPLX4Q7Z7G2 160 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 CLEC4FQ8N1N0 589 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 OR4A15Q8NGL6 344 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 LMF1Q96S06 567 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 NMUR2Q9GZQ4 415 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 NXF5Q9H1B4 397 aaKnown RBP20.15■□□□□ 0.82
SNX1-210ENST00000560260 NEUROD4Q9HD90 331 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 TAS2R9Q9NYW1 312 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 STMN3Q9NZ72 180 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 BTNL2Q9UIR0 455 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 PCDHGB7Q9Y5F8 929 aa20.15■□□□□ 0.82
SNX1-210ENST00000560260 ATXN7O15265 892 aaPredicted RBP20.14■□□□□ 0.81
SNX1-210ENST00000560260 CFLARO15519 480 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 EMC8O43402 210 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 COQ9O75208 318 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 IL6P05231 212 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 ZNF155Q12901 538 aaPredicted RBP20.14■□□□□ 0.81
SNX1-210ENST00000560260 IGFL3Q6UXB1 125 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 RBMXL3Q8N7X1 1067 aaKnown RBP20.14■□□□□ 0.81
SNX1-210ENST00000560260 NUP43Q8NFH3 380 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 OR5L2Q8NGL0 311 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 OR5AK3PQ8NH89 298 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 EPN3Q9H201 632 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 EPS8L2Q9H6S3 715 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 ZCCHC3Q9NUD5 404 aaKnown RBP20.14■□□□□ 0.81
SNX1-210ENST00000560260 ANKRD10Q9NXR5 420 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 PRODH2Q9UF12 536 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 TEKT2Q9UIF3 430 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 SNX8Q9Y5X2 465 aa20.14■□□□□ 0.81
SNX1-210ENST00000560260 NUP214P35658 2090 aaPredicted RBP20.14■□□□□ 0.81
SNX1-210ENST00000560260 SPENQ96T58 3664 aaKnown RBP20.14■□□□□ 0.81
SNX1-210ENST00000560260 BCAS2O75934 225 aaPredicted RBP20.13■□□□□ 0.81
SNX1-210ENST00000560260 SOAT1P35610 550 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 NR0B1P51843 470 aaKnown RBP20.13■□□□□ 0.81
SNX1-210ENST00000560260 CORO7P57737 925 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 TUBA3CQ13748 450 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 PIGGQ5H8A4 983 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 TUBA3EQ6PEY2 450 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 SLC2A7Q6PXP3 512 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 SZRD1Q7Z422 152 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 ZNF227Q86WZ6 799 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 GOT1L1Q8NHS2 421 aaPredicted RBP20.13■□□□□ 0.81
SNX1-210ENST00000560260 SFXN5Q8TD22 340 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 SPDL1Q96EA4 605 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 MS4A4EQ96PG1 132 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 BTBD9Q96Q07 612 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 RNF32Q9H0A6 362 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 SLC25A18Q9H1K4 315 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 EQTNQ9NQ60 294 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 SLC6A13Q9NSD5 602 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 TMEM45AQ9NWC5 275 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 CFL2Q9Y281 166 aa20.13■□□□□ 0.81
SNX1-210ENST00000560260 YARS2Q9Y2Z4 477 aaKnown RBP20.13■□□□□ 0.81
SNX1-210ENST00000560260 TLN1Q9Y490 2541 aaKnown RBP20.13■□□□□ 0.81
SNX1-210ENST00000560260 OR6B1O95007 311 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 CT45A8P0DMV1 189 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 CT45A9P0DMV2 189 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 TRHRP34981 398 aaPredicted RBP20.12■□□□□ 0.81
SNX1-210ENST00000560260 SOX3P41225 446 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 CCT3P49368 545 aaKnown RBP20.12■□□□□ 0.81
SNX1-210ENST00000560260 PRKAG1P54619 331 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 KCNK10P57789 538 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 TLR1Q15399 786 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 VPS26BQ4G0F5 336 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 CT45A2Q5DJT8 189 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 EXOSC6Q5RKV6 272 aaKnown RBP20.12■□□□□ 0.81
SNX1-210ENST00000560260 DNAJC14Q6Y2X3 702 aaPredicted RBP20.12■□□□□ 0.81
SNX1-210ENST00000560260 MSANTD1Q6ZTZ1 278 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 PIGWQ7Z7B1 504 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 CATSPER1Q8NEC5 780 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 FBXO30Q8TB52 745 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 C16orf58Q96GQ5 468 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 SIGLEC12Q96PQ1 595 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 C3orf14Q9HBI5 128 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 GPATCH2Q9NW75 528 aa20.12■□□□□ 0.81
SNX1-210ENST00000560260 GPR55Q9Y2T6 319 aaPredicted RBP20.12■□□□□ 0.81
SNX1-210ENST00000560260 RNF103-CHMP3A0A140T963 221 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 FCHO1O14526 889 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 ERN1O75460 977 aaKnown RBP20.11■□□□□ 0.81
SNX1-210ENST00000560260 GSNP06396 782 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 ACP2P11117 423 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 PTPN6P29350 595 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 CD96P40200 585 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 MAP3K8P41279 467 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 PPICP45877 212 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 SSR4P51571 173 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 PSG6Q00889 435 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 KLF10Q13118 480 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 GTDC1Q4AE62 458 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 COLEC12Q5KU26 742 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 HLA-DQA1Q5Y7H0 255 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 MFSD12Q6NUT3 480 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 PRR22Q8IZ63 422 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 C17orf47Q8NEP4 570 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 VPS37AQ8NEZ2 397 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 GTF2H4Q92759 462 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms