RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 WDR7Q9Y4E6 1490 aa2.65□□□□□ -1.98
VPS13C-208ENST00000559119 DNMT1P26358 1616 aaKnown RBP2.65□□□□□ -1.98
VPS13C-208ENST00000559119 ASXL1Q8IXJ9 1541 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 DISP1Q96F81 1524 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 A0A1W2PQ67 120 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 A8MXE2 369 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 ERVV-1B6SEH8 477 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 EEF2KO00418 725 aaKnown RBP2.65□□□□□ -1.99
VPS13C-208ENST00000559119 MPHOSPH10O00566 681 aaKnown RBP2.65□□□□□ -1.99
VPS13C-208ENST00000559119 UBE2CO00762 179 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 PSMD3O43242 534 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 LRP3O75074 770 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 RTN2O75298 545 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 NUDT14O95848 222 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 RPS2P15880 293 aaKnown RBP2.65□□□□□ -1.99
VPS13C-208ENST00000559119 OAS2P29728 719 aaKnown RBP2.65□□□□□ -1.99
VPS13C-208ENST00000559119 KRT20P35900 424 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 PRPHP41219 470 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 RAD52P43351 418 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 MAGEA8P43361 318 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 CD151P48509 253 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 NT5C2P49902 561 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 CCR4P51679 360 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 DIO3P55073 304 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 IL17AQ16552 155 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 KYAT1Q16773 422 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 AP1ARQ63HQ0 302 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 APOOLQ6UXV4 268 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 DZIP1Q86YF9 867 aaKnown RBP2.65□□□□□ -1.99
VPS13C-208ENST00000559119 LRRC8AQ8IWT6 810 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 LINC01555Q8NAE3 123 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 CCDC26Q8TAB7 109 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 PNPLA2Q96AD5 504 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 VPS33AQ96AX1 596 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 BSCL2Q96G97 398 aaPredicted RBP2.65□□□□□ -1.99
VPS13C-208ENST00000559119 C16orf45Q96MC5 204 aaPredicted RBP2.65□□□□□ -1.99
VPS13C-208ENST00000559119 FUT8Q9BYC5 575 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 RABEP2Q9H5N1 569 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 ZNF702PQ9H963 129 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 BATF3Q9NR55 127 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 HOMER3Q9NSC5 361 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 C5AR2Q9P296 337 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 PDS5BQ9NTI5 1447 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 EIF4G3O43432 1585 aaKnown RBP2.65□□□□□ -1.99
VPS13C-208ENST00000559119 LAMC3Q9Y6N6 1575 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 TTC41PQ6P2S7 1318 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 PHLPP2Q6ZVD8 1323 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 ADGRL1O94910 1474 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 IQSEC2Q5JU85 1478 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 MAGI2Q86UL8 1455 aa2.65□□□□□ -1.99
VPS13C-208ENST00000559119 TRPM1Q7Z4N2 1603 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 PIK3R4Q99570 1358 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 KIAA0586Q9BVV6 1533 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 TRIOBPQ9H2D6 2365 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 SPRR5A0A1B0GTR4 108 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 PES1O00541 588 aaKnown RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 CHUKO15111 745 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 POLR3GO15318 223 aaPredicted RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 NUDT21O43809 227 aaKnown RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 PLOD3O60568 738 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 ERLIN2O94905 339 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 GBAP04062 536 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 ADRA2CP18825 462 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 CASTP20810 708 aaKnown RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 GLRA1P23415 457 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 IL2RGP31785 369 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 PPOXP50336 477 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 MNAT1P51948 309 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 ARHGDIBP52566 201 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 SLC7A2P52569 658 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 RPS8P62241 208 aaKnown RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 CCZ1BP86790 482 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 CCZ1P86791 482 aaPredicted RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 FOLH1Q04609 750 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 SLC3A1Q07837 685 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 MFGE8Q08431 387 aaPredicted RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 PDIA5Q14554 519 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 DCAF12Q5T6F0 453 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 C1orf189Q5VU69 101 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 SNRNP48Q6IEG0 339 aaKnown RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 LRRC31Q6UY01 552 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 GBP6Q6ZN66 633 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 KRT74Q7RTS7 529 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 C17orf64Q86WR6 236 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 CCDC50Q8IVM0 306 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 C4orf19Q8IY42 314 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 DRAXINQ8NBI3 349 aaPredicted RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 SRSF12Q8WXF0 261 aaKnown RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 CABS1Q96KC9 395 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 TBX15Q96SF7 602 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 SUDS3Q9H7L9 328 aaPredicted RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 MINDY3Q9H8M7 445 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 MIEF1Q9NQG6 463 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 HPS4Q9NQG7 708 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 FAM212BQ9NTI7 297 aaPredicted RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 CFDP1Q9UEE9 299 aaPredicted RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 GGA2Q9UJY4 613 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 CCL27Q9Y4X3 112 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 OR1A2Q9Y585 309 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 NOS1P29475 1434 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms