RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ZCCHC3Q9NUD5 404 aaKnown RBP11.88□□□□□ -0.51
SHMT2-227ENST00000557269 GPATCH2Q9NW75 528 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 SLC25A37Q9NYZ2 338 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 PCDHGB4Q9UN71 923 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 NDUFAF1Q9Y375 327 aa11.88□□□□□ -0.51
SHMT2-227ENST00000557269 HEMK1Q9Y5R4 338 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-227ENST00000557269 DOCK10Q96BY6 2186 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 RNF103-CHMP3A0A140T963 221 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 C2orf92A0A1B0GVN3 265 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 OR6C76A6NM76 312 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 SLC22A2O15244 555 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 PDGFAP04085 211 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 ITGB2P05107 769 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 FAM87AP0C7U9 286 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 UQCRC2P22695 453 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 CORO7P57737 925 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 MLF1P58340 268 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 RPS26P62854 115 aaKnown RBP11.87□□□□□ -0.51
SHMT2-227ENST00000557269 NNATQ16517 81 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 SPDYE7PQ495Y7 208 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 ACER2Q5QJU3 275 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 EXOSC6Q5RKV6 272 aaKnown RBP11.87□□□□□ -0.51
SHMT2-227ENST00000557269 C6orf10Q5SRN2 563 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 ZNF468Q5VIY5 522 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-227ENST00000557269 DLEU7Q6UYE1 221 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 NPSR1Q6W5P4 371 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 LINC00696Q6ZRV3 163 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 SLC29A4Q7RTT9 530 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 C6orf120Q7Z4R8 191 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 RPS19BP1Q86WX3 136 aaKnown RBP11.87□□□□□ -0.51
SHMT2-227ENST00000557269 FITM2Q8N6M3 262 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 NUBPLQ8TB37 319 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 FBXO30Q8TB52 745 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 SFXN5Q8TD22 340 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 TSPEARQ8WU66 669 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 AURKBQ96GD4 344 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-227ENST00000557269 LRRC37BQ96QE4 947 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 LMF1Q96S06 567 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 SLC35A5Q9BS91 424 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 NXF5Q9H1B4 397 aaKnown RBP11.87□□□□□ -0.51
SHMT2-227ENST00000557269 RMND5AQ9H871 391 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 C3orf14Q9HBI5 128 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 MYOTQ9UBF9 498 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 VPS4AQ9UN37 437 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 PCDHB14Q9Y5E9 798 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 USP24Q9UPU5 2620 aa11.87□□□□□ -0.51
SHMT2-227ENST00000557269 MGAQ8IWI9 3026 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 A0A096LPI6 279 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 TRBV5-3A0A0A0MS03 114 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 DYTNA2CJ06 578 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 ANGPT2O15123 496 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 COQ9O75208 318 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 BCAS2O75934 225 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-227ENST00000557269 DCTN3O75935 186 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 OR2J2O76002 312 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 NADKO95544 446 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-227ENST00000557269 F10P00742 488 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 HMGN2P05204 90 aaKnown RBP11.86□□□□□ -0.51
SHMT2-227ENST00000557269 ZCCHC18P0CG32 403 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 CT45A8P0DMV1 189 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 CT45A9P0DMV2 189 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 ACP2P11117 423 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 COX4I1P13073 169 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 MAP3K8P41279 467 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 TRPC1P48995 793 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 NR0B1P51843 470 aaKnown RBP11.86□□□□□ -0.51
SHMT2-227ENST00000557269 PRR5P85299 388 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 PSG6Q00889 435 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 LRRC74AQ0VAA2 488 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 ZNF155Q12901 538 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-227ENST00000557269 TP53BP2Q13625 1128 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 CYLC2Q14093 348 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-227ENST00000557269 CT45A2Q5DJT8 189 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 PIGGQ5H8A4 983 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 CRB2Q5IJ48 1285 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 LRIF1Q5T3J3 769 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 SAXO2Q658L1 398 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 REP15Q6BDI9 236 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 MFSD12Q6NUT3 480 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 LYPD8Q6UX82 237 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 BEST3Q8N1M1 668 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 DPP10Q8N608 796 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 SLC5A8Q8N695 610 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 OR4N2Q8NGD1 307 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 OR5L2Q8NGL0 311 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 RP9Q8TA86 221 aaKnown RBP11.86□□□□□ -0.51
SHMT2-227ENST00000557269 HOXB13Q92826 284 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-227ENST00000557269 MS4A4EQ96PG1 132 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 PHF12Q96QT6 1004 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 SLC25A23Q9BV35 468 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 TRIM8Q9BZR9 551 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 IL1RL2Q9HB29 575 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 MRGBPQ9NV56 204 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 ARL8BQ9NVJ2 186 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.86□□□□□ -0.516e-6■■□□□ 12.1
SHMT2-227ENST00000557269 PLA2G3Q9NZ20 509 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 STMN3Q9NZ72 180 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 VAPAQ9P0L0 249 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 PRODH2Q9UF12 536 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 LEF1Q9UJU2 399 aaPredicted RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms