RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	LEFTY1	O75610	366 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ALX3	O95076	343 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	HTR1A	P08908	422 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	CD70	P32970	193 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ETV5	P41161	510 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	PIK3CB	P42338	1070 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	MTNR1A	P48039	350 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	NRIP1	P48552	1158 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ETV1	P50549	477 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	CCR6	P51684	374 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	VSX2	P58304	361 aa	Predicted RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	MC2R	Q01718	297 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	NKG7	Q16617	165 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	COL28A1	Q2UY09	1125 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	FAM205BP	Q63HN1	556 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	PAQR6	Q6TCH4	344 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	TPRG1	Q6ZUI0	275 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	SDR16C5	Q8N3Y7	309 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	NUP43	Q8NFH3	380 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR5J2	Q8NH18	312 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR52P1P	Q8NH57	321 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ECHDC3	Q96DC8	303 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF471	Q9BX82	626 aa	Predicted RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	DPH1	Q9BZG8	443 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ABCG4	Q9H172	646 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	MTG2	Q9H4K7	406 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	DMRT3	Q9NQL9	472 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	TMEM45A	Q9NWC5	275 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	STOX2	Q9P2F5	926 aa	Predicted RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	MYH9	P35579	1960 aa	Known RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005		A0A0X1KG70	313 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZC3H12D	A2A288	527 aa	Known RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005		F5H5P2	479 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	FZD9	O00144	591 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	KHNYN	O15037	678 aa	Known RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	UCHL1	P09936	223 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	C1GALT1C1L	P0DN25	315 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	BMP1	P13497	986 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	PGAM2	P15259	253 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	NPR2	P20594	1047 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	SOX2	P48431	317 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	AP1S2	P56377	157 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	TAS2R43	P59537	309 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	STXBP1	P61764	594 aa	Known RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	TAP2	Q03519	686 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	TMEM115	Q12893	351 aa	Predicted RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	MLLT11	Q13015	90 aa	Predicted RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	CAMK1	Q14012	370 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	SEC23B	Q15437	767 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	CFAP77	Q6ZQR2	320 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	COMMD6	Q7Z4G1	85 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	PLCZ1	Q86YW0	608 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	VRK3	Q8IV63	474 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	SERPINA12	Q8IW75	414 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	POGLUT1	Q8NBL1	392 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	DBF4B	Q8NFT6	615 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR56A1	Q8NGH5	318 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	CCDC107	Q8WV48	283 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	BRI3BP	Q8WY22	251 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC25A36	Q96CQ1	311 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	CAMK1G	Q96NX5	476 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	CD180	Q99467	661 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	IKZF5	Q9H5V7	419 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	DDX31	Q9H8H2	851 aa	Known RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	NEUROD4	Q9HD90	331 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	GLTP	Q9NZD2	209 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	COPS3	Q9UNS2	423 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005		A0A0U1RQF3	1178 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	URAD	A6NGE7	173 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005		H7BY64	318 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ARPC5	O15511	151 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	GPX5	O75715	221 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	STC2	O76061	302 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ADH1C	P00326	375 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ADA	P00813	363 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	HMGN1	P05114	100 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	CD3G	P09693	182 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ACP5	P13686	325 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	RAB3B	P20337	219 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	BMP8B	P34820	402 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	MAP3K8	P41279	467 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR3A3	P47888	321 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	FCN2	Q15485	313 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	NDUFA9	Q16795	377 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	TAS1R1	Q7RTX1	841 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	BMP8A	Q7Z5Y6	402 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	VRK2	Q86Y07	508 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	NRM	Q8IXM6	262 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	MMP21	Q8N119	569 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC44A3	Q8N4M1	653 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	LINC00471	Q8N535	108 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	GPR26	Q8NDV2	337 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	KLHDC9	Q8NEP7	349 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	RNASE11	Q8TAA1	199 aa	Known RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	CASTOR1	Q8WTX7	329 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	TRIB2	Q92519	343 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	PEX13	Q92968	403 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	TESC	Q96BS2	214 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	PRAP1	Q96NZ9	151 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	MCHR1	Q99705	422 aa		4.73	□□□□□ -1.65

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