RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 TRAV34A0A0B4J273 112 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 MARCH11A6NNE9 402 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 FOXE1O00358 373 aaPredicted RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 ACOX3O15254 700 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 KLF4O43474 513 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 UGDHO60701 494 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 RECQL5O94762 991 aaPredicted RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SLCO2B1O94956 709 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 WDR47O94967 919 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 B3GALT4O96024 378 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 TPOP07202 933 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 NDUFB7P17568 137 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 POU1F1P28069 291 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 VIPR2P41587 438 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 CDKN2CP42773 168 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 ALDH3B2P48448 385 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 PFN3P60673 137 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 BNC1Q01954 994 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 CPSF6Q16630 551 aaKnown RBP eCLIP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 TSTQ16762 297 aaKnown RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 CCSMST1Q4G0I0 132 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 C9orf152Q5JTZ5 239 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SPANXN4Q5MJ08 99 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 PLEKHS1Q5SXH7 462 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 ARHGAP40Q5TG30 622 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SLX4IPQ5VYV7 408 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 LIPIQ6XZB0 460 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 DPPA4Q7L190 304 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 GPR180Q86V85 440 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 IFNEQ86WN2 208 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 RNF175Q8N4F7 328 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 DTWD1Q8N5C7 304 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 RASGEF1AQ8N9B8 481 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 BTN2A2Q8WVV5 523 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 KLHL6Q8WZ60 621 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SLC25A36Q96CQ1 311 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 PPP3R2Q96LZ3 170 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 CLMPQ9H6B4 373 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 METTL8Q9H825 291 aaKnown RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 PNPLA3Q9NST1 481 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 COPZ2Q9P299 210 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 CAMK2AQ9UQM7 478 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 FKBP7Q9Y680 259 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 LAMA1P25391 3075 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 HEATR5BQ9P2D3 2071 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 C2orf92A0A1B0GVN3 265 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 ISPDA4D126 451 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 URADA6NGE7 173 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 AHRRA9YTQ3 701 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SMAD7O15105 426 aaKnown RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 RGS14O43566 566 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 DFNA5O60443 496 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 TULP3O75386 442 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 NSA2O95478 260 aaKnown RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 CLDN9O95484 217 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SERPINA3P01011 423 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 IGHEP01854 428 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 C8GP07360 202 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 MPC1LP0DKB6 136 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SLC2A4P14672 509 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 ZNF10P21506 573 aaPredicted RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 TACR1P25103 407 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 HTR1EP28566 365 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 PCSK6P29122 969 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 CRABP1P29762 137 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 BDKRB2P30411 391 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SERPINF1P36955 418 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 IL12RB1P42701 662 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 EEFSECP57772 596 aaKnown RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SELENOVP59797 346 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 IL24Q13007 206 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 IRF4Q15306 451 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 FAM174BQ3ZCQ3 159 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 NHSL2Q5HYW2 709 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 GPR107Q5VW38 600 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SYCE2Q6PIF2 218 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 LRRC70Q7Z2Q7 622 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 CARM1Q86X55 608 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 LACC1Q8IV20 430 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 DMRTC2Q8IXT2 367 aaPredicted RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SLC22A15Q8IZD6 547 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 LIX1Q8N485 282 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 C12orf76Q8N812 135 aaPredicted RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 ZNF557Q8N988 423 aaPredicted RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 L3MBTL4Q8NA19 623 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 PAPD5Q8NDF8 572 aaKnown RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 RCBTB1Q8NDN9 531 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 VN1R2Q8NFZ6 395 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 TP53INP1Q96A56 240 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 TMCO6Q96DC7 493 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 CNBD2Q96M20 576 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 ZNF583Q96ND8 569 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 KCTD14Q9BQ13 255 aaPredicted RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 RNF32Q9H0A6 362 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SERHLQ9NQF3 203 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 GPN3Q9UHW5 284 aaPredicted RBP4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SLC27A6Q9Y2P4 619 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 TESMINQ9Y4I5 508 aa4.83□□□□□ -1.64
TMEM260-210ENST00000556422 SNRNP200O75643 2136 aaKnown RBP4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms