RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 UGDHO60701 494 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 YES1P07947 543 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 DDCP20711 480 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 GNA13Q14344 377 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 ODF4Q2M2E3 257 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 CDKL4Q5MAI5 379 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 VRK2Q86Y07 508 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 MARCH9Q86YJ5 346 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 CYB561A3Q8NBI2 242 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 OR2L2Q8NH16 312 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 LRRC3BQ96PB8 259 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 DUSP21Q9H596 190 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 SPATA6Q9NWH7 488 aaPredicted RBP14.05□□□□□ -0.16
CUX1-215ENST00000556210 NLGN3Q9NZ94 848 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 TAAR2Q9P1P5 351 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 REM1O75628 298 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 OR5F1O95221 314 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 EN2P19622 333 aaPredicted RBP14.05□□□□□ -0.16
CUX1-215ENST00000556210 STXBP1P61764 594 aaKnown RBP14.05□□□□□ -0.16
CUX1-215ENST00000556210 SMU1Q2TAY7 513 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 MZT2BQ6NZ67 158 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 ACOT4Q8N9L9 421 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 CRELD1Q96HD1 420 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 TMEM80Q96HE8 168 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 BEX1Q9HBH7 125 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 UGT2A1Q9Y4X1 527 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 WDR90Q96KV7 1748 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 OTOL1A6NHN0 477 aaPredicted RBP14.05□□□□□ -0.16
CUX1-215ENST00000556210 CLDN24A6NM45 220 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 VEGFDO43915 354 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 HOXB3P14651 431 aaPredicted RBP14.05□□□□□ -0.16
CUX1-215ENST00000556210 RAB28P51157 221 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 CEP78Q5JTW2 689 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 NRARPQ7Z6K4 114 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 OR52E1Q8NGJ3 308 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 OR6K6Q8NGW6 343 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 LILRB4Q8NHJ6 448 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 SLC17A9Q9BYT1 436 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 ZDHHC5Q9C0B5 715 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 PCBD2Q9H0N5 130 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 TMEM45AQ9NWC5 275 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 CLCA3PQ9Y6N3 262 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 OR6C74A6NCV1 312 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 CD8B2A6NJW9 211 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 TMPRSS11DO60235 418 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 SRPRAP08240 638 aaKnown RBP14.04□□□□□ -0.16
CUX1-215ENST00000556210 ADORA3P0DMS8 318 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 CD8BP10966 210 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 PSKH1P11801 424 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 GJA4P35212 333 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 PXNP49023 591 aaPredicted RBP14.04□□□□□ -0.16
CUX1-215ENST00000556210 RGS6P49758 472 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 MFSD4AQ8N468 514 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 DNAJC22Q8N4W6 341 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 PJA1Q8NG27 643 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 GRPEL2Q8TAA5 225 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 RBM18Q96H35 190 aaKnown RBP14.04□□□□□ -0.16
CUX1-215ENST00000556210 SLC22A4Q9H015 551 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 MMP28Q9H239 520 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 CDV3Q9UKY7 258 aaKnown RBP14.04□□□□□ -0.16
CUX1-215ENST00000556210 NTNG1Q9Y2I2 539 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 C2orf92A0A1B0GVN3 265 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 CARNS1A5YM72 827 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 RNGTTO60942 597 aaKnown RBP14.04□□□□□ -0.16
CUX1-215ENST00000556210 KLF8O95600 359 aaPredicted RBP14.04□□□□□ -0.16
CUX1-215ENST00000556210 FCHO2Q0JRZ9 810 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 IRF4Q15306 451 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 PODNL1Q6PEZ8 512 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 PDZD3Q86UT5 571 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 NRMQ8IXM6 262 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 SRFBP1Q8NEF9 429 aaKnown RBP14.04□□□□□ -0.16
CUX1-215ENST00000556210 C9orf43Q8TAL5 461 aaPredicted RBP14.04□□□□□ -0.16
CUX1-215ENST00000556210 IL21RQ9HBE5 538 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 PRSS16Q9NQE7 514 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 GREB1Q4ZG55 1949 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 ITPKBP27987 946 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 BLVRAP53004 296 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 FAM214AQ32MH5 1076 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 LRIT3Q3SXY7 679 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 FBXO15Q8NCQ5 510 aaPredicted RBP14.04□□□□□ -0.16
CUX1-215ENST00000556210 BBS10Q8TAM1 723 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 RASSF5Q8WWW0 418 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 SLC35B4Q969S0 331 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 TXNDC15Q96J42 360 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 SECISBP2Q96T21 854 aaKnown RBP14.04□□□□□ -0.16
CUX1-215ENST00000556210 PSD2Q9BQI7 771 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 ALOXE3Q9BYJ1 711 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 ING3Q9NXR8 418 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 NUFIP1Q9UHK0 495 aaKnown RBP14.04□□□□□ -0.16
CUX1-215ENST00000556210 ATG4BQ9Y4P1 393 aa14.04□□□□□ -0.16
CUX1-215ENST00000556210 METTL15A6NJ78 407 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 HLA-DQA2P01906 255 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 PIK3CBP42338 1070 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 CHRNEQ04844 493 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 CSTF1Q05048 431 aaKnown RBP14.03□□□□□ -0.16
CUX1-215ENST00000556210 ZNF77Q15935 545 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 CDKN3Q16667 212 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 FAM109BQ6ICB4 259 aaPredicted RBP14.03□□□□□ -0.16
CUX1-215ENST00000556210 CHCHD4Q8N4Q1 142 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 SMURF1Q9HCE7 757 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms