RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 CRTC2Q53ET0 693 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-208ENST00000553868 TMEM64Q6YI46 380 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 MED25Q71SY5 747 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 ZNF551Q7Z340 670 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-208ENST00000553868 OR51Q1Q8NH59 317 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 SFXN5Q8TD22 340 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 ZFP90Q8TF47 636 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 CNRIP1Q96F85 164 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-208ENST00000553868 PEX11GQ96HA9 241 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 ZNF681Q96N22 645 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 PELOQ9BRX2 385 aaKnown RBP13.52□□□□□ -0.25
SHMT2-208ENST00000553868 GLIPR2Q9H4G4 154 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 C3orf14Q9HBI5 128 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 SLAMF7Q9NQ25 335 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 FBXO8Q9NRD0 319 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 PRTFDC1Q9NRG1 225 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 POMPQ9Y244 141 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 POLHQ9Y253 713 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 SNX8Q9Y5X2 465 aa13.52□□□□□ -0.25
SHMT2-208ENST00000553868 RNF103-CHMP3A0A140T963 221 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 FAM220BPB1ANY3 271 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 CTNSO60931 367 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 DNAJB6O75190 326 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 FHP07954 510 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 IFI6P09912 130 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 CPMP14384 443 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 HOXB4P17483 251 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-208ENST00000553868 GPX2P18283 190 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 TCN1P20061 433 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-208ENST00000553868 FEN1P39748 380 aaKnown RBP13.51□□□□□ -0.25
SHMT2-208ENST00000553868 STAT5AP42229 794 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 HSD17B7P56937 341 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 TXNL4AP83876 142 aaKnown RBP13.51□□□□□ -0.25
SHMT2-208ENST00000553868 PRR5P85299 388 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 FOLH1Q04609 750 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 FADDQ13158 208 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 GAB1Q13480 694 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 FLOT2Q14254 428 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 ERICH5Q6P6B1 374 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 ANGPTL8Q6UXH0 198 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 SERPINA11Q86U17 422 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 IFNEQ86WN2 208 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 CCDC116Q8IYX3 515 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 METTL27Q8N6F8 245 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-208ENST00000553868 RNF148Q8N7C7 305 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 OR2T12Q8NG77 320 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 OR56A1Q8NGH5 318 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 OR52N2Q8NGI0 321 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 STMN2Q93045 179 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 UCN3Q969E3 161 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 CLIP3Q96DZ5 547 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 LURAP1Q96LR2 239 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 LRGUKQ96M69 825 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 YIPF2Q9BWQ6 316 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 KAT8Q9H7Z6 458 aaKnown RBP13.51□□□□□ -0.25
SHMT2-208ENST00000553868 MKKSQ9NPJ1 570 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-208ENST00000553868 SLC6A13Q9NSD5 602 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 DHCR7Q9UBM7 475 aaKnown RBP13.51□□□□□ -0.25
SHMT2-208ENST00000553868 TRPC4Q9UBN4 977 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 MMACHCQ9Y4U1 282 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 DCHS2Q6V1P9 2916 aa13.51□□□□□ -0.25
SHMT2-208ENST00000553868 PCSK5Q92824 1860 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 FAM227AF5H4B4 570 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 GSTA4O15217 222 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 CPNE3O75131 537 aaKnown RBP13.5□□□□□ -0.25
SHMT2-208ENST00000553868 BCAS2O75934 225 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-208ENST00000553868 SLC35E2P0CK97 266 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 C8orf89P0DMQ9 161 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 DLSTP36957 453 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 XCR1P46094 333 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 CCT3P49368 545 aaKnown RBP13.5□□□□□ -0.25
SHMT2-208ENST00000553868 CDK9P50750 372 aaKnown RBP13.5□□□□□ -0.25
SHMT2-208ENST00000553868 PGDP52209 483 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 RAB15P59190 212 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 ACTR3P61158 418 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 MAT1AQ00266 395 aaKnown RBP13.5□□□□□ -0.25
SHMT2-208ENST00000553868 STX4Q12846 297 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 CHAF1BQ13112 559 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 SLC13A2Q13183 592 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 SERTAD2Q14140 314 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 KPNB1Q14974 876 aaKnown RBP13.5□□□□□ -0.25
SHMT2-208ENST00000553868 CYP51A1Q16850 503 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 OR10A6Q8NH74 314 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 POP5Q969H6 163 aaKnown RBP13.5□□□□□ -0.25
SHMT2-208ENST00000553868 NEURL3Q96EH8 262 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 AURKBQ96GD4 344 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-208ENST00000553868 REXO5Q96IC2 774 aaKnown RBP13.5□□□□□ -0.25
SHMT2-208ENST00000553868 DENND2DQ9H6A0 471 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-208ENST00000553868 CXorf36Q9H7Y0 433 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 THUMPD1Q9NXG2 353 aaKnown RBP13.5□□□□□ -0.25
SHMT2-208ENST00000553868 MAGEL2Q9UJ55 1249 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 PACSIN3Q9UKS6 424 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 SNX13Q9Y5W8 968 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 MAU2Q9Y6X3 613 aa13.5□□□□□ -0.25
SHMT2-208ENST00000553868 ELOVL7A1L3X0 281 aa13.49□□□□□ -0.25
SHMT2-208ENST00000553868 WASHC1A8K0Z3 465 aa13.49□□□□□ -0.25
SHMT2-208ENST00000553868 EMC8O43402 210 aa13.49□□□□□ -0.25
SHMT2-208ENST00000553868 FGF17O60258 216 aa13.49□□□□□ -0.25
SHMT2-208ENST00000553868 OR10H2O60403 315 aa13.49□□□□□ -0.25
SHMT2-208ENST00000553868 B4GALT2O60909 372 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms