RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 DPY30Q9C005 99 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 FOLH1BQ9HBA9 442 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 MED4Q9NPJ6 270 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 ACSS1Q9NUB1 689 aaPredicted RBP13.03□□□□□ -0.32
PTCH1-226ENST00000553011 AIG1Q9NVV5 245 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 PRODH2Q9UF12 536 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 PCDHGB6Q9Y5F9 930 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 NCKAP5O14513 1909 aa13.03□□□□□ -0.32
PTCH1-226ENST00000553011 UBR5O95071 2799 aaPredicted RBP13.02□□□□□ -0.32
PTCH1-226ENST00000553011 TENM4Q6N022 2769 aa13.02□□□□□ -0.32
PTCH1-226ENST00000553011 A0A087WV62 115 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 UPK1AO00322 258 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 PLOD2O00469 737 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 ANKRD28O15084 1053 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 DIAPH2O60879 1101 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 BCAS2O75934 225 aaPredicted RBP13.02□□□□□ -0.33
PTCH1-226ENST00000553011 SLITRK5O94991 958 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 RASAL1O95294 804 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 FBXO45P0C2W1 286 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 DDX5P17844 614 aaKnown RBP13.02□□□□□ -0.33
PTCH1-226ENST00000553011 NME5P56597 212 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 C21orf58P58505 322 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 GPR85P60893 370 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 FOXK1P85037 733 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 INAQ16352 499 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 PGS1Q32NB8 556 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 TMEM198Q66K66 360 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 EPGNQ6UW88 154 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 FAM180AQ6UWF9 173 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 RTL4Q6ZR62 310 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 RGS9BPQ6ZS82 235 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 SPATA19Q7Z5L4 167 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 TAGAPQ8N103 731 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 OR2L13Q8N349 312 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 PSD4Q8NDX1 1056 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 C17orf47Q8NEP4 570 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 ACTRT2Q8TDY3 377 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 COQ8BQ96D53 544 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 LCORQ96JN0 433 aaPredicted RBP13.02□□□□□ -0.33
PTCH1-226ENST00000553011 VSTM2LQ96N03 204 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 PRPF18Q99633 342 aaKnown RBP13.02□□□□□ -0.33
PTCH1-226ENST00000553011 DUSP26Q9BV47 211 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 TIMMDC1Q9NPL8 285 aa13.02□□□□□ -0.33
PTCH1-226ENST00000553011 DDX18Q9NVP1 670 aaKnown RBP13.02□□□□□ -0.33
PTCH1-226ENST00000553011 C19orf53Q9UNZ5 99 aaPredicted RBP13.02□□□□□ -0.33
PTCH1-226ENST00000553011 DIDO1Q9BTC0 2240 aaKnown RBP13.02□□□□□ -0.33
PTCH1-226ENST00000553011 A0A0G2JMM0 328 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 A0A1W2PPB8 328 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 A0A1W2PRB8 838 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 A0A1W2PRS3 328 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 KIR3DP1A8MWS1 328 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 TCP11X1B4DZS4 312 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 G3V3Y1 287 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 J3QKU1 62 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 COQ9O75208 318 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 PSMG1O95456 288 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 CCL3P10147 92 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 PPICP45877 212 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 CORO7P57737 925 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 UFM1P61960 85 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 ZNF155Q12901 538 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-226ENST00000553011 LSM12Q3MHD2 195 aaKnown RBP13.01□□□□□ -0.33
PTCH1-226ENST00000553011 OR4F3Q6IEY1 312 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 NPSR1Q6W5P4 371 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 WDR53Q7Z5U6 358 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-226ENST00000553011 CAMKMTQ7Z624 323 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-226ENST00000553011 SULF2Q8IWU5 870 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 CPSF7Q8N684 471 aaKnown RBP13.01□□□□□ -0.33
PTCH1-226ENST00000553011 ARFGAP2Q8N6H7 521 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 FAM13CQ8NE31 585 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 OR10G3Q8NGC4 313 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 OR5M3Q8NGP4 307 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 FAR1Q8WVX9 515 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 THOC1Q96FV9 657 aaKnown RBP13.01□□□□□ -0.33
PTCH1-226ENST00000553011 SGCZQ96LD1 299 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 TEX37Q96LM6 180 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 BARD1Q99728 777 aaKnown RBP13.01□□□□□ -0.33
PTCH1-226ENST00000553011 EBF4Q9BQW3 602 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 SIRT3Q9NTG7 399 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-226ENST00000553011 DEPPQ9NTK1 212 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 ATAD3AQ9NVI7 634 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 TAS2R9Q9NYW1 312 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 GPR55Q9Y2T6 319 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-226ENST00000553011 KLF13Q9Y2Y9 288 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-226ENST00000553011 NPFFR2Q9Y5X5 522 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 GPR45Q9Y5Y3 372 aa13.01□□□□□ -0.33
PTCH1-226ENST00000553011 LRRK2Q5S007 2527 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 ASPDHA6ND91 283 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 FRG2CA6NGY1 282 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 C9JVG2 144 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 PEX1O43933 1283 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 EDF1O60869 148 aaKnown RBP13□□□□□ -0.33
PTCH1-226ENST00000553011 ERN1O75460 977 aaKnown RBP13□□□□□ -0.33
PTCH1-226ENST00000553011 C6orf47O95873 294 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 IFI6P09912 130 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 CT45A8P0DMV1 189 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 CT45A9P0DMV2 189 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 DRD5P21918 477 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 ABCD3P28288 659 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms