RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 RNF121Q9H920 327 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 SLAMF7Q9NQ25 335 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 KCTD5Q9NXV2 234 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 TAS2R7Q9NYW3 318 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 POFUT2Q9Y2G5 429 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 CCDC88CQ9P219 2028 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 A0A1W2PRB8 838 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 GLOD5A6NK44 160 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 L7N2F9 121 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 EIF3FO00303 357 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 GMFGO60234 142 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 PTHP01270 115 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 KLK1P06870 262 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 LAMP1P11279 417 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 CYP2A6P11509 494 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ENDOUP21128 410 aaKnown RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 HRH2P25021 359 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 TACR1P25103 407 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 STOMP27105 288 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ZFP36L2P47974 494 aaKnown RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 HCAR3P49019 387 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 RGS6P49758 472 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 VLDLRP98155 873 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 GINS1Q14691 196 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 TAF1AQ15573 450 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ODF4Q2M2E3 257 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 KCTD11Q693B1 232 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 NOXRED1Q6NXP6 359 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 SHQ1Q6PI26 577 aaKnown RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 CD300LGQ6UXG3 332 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 CEACAM20Q6UY09 585 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 WASH2PQ6VEQ5 465 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 BCDIN3DQ7Z5W3 292 aaKnown RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 DEFB128Q7Z7B8 93 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 CFAP206Q8IYR0 622 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF557Q8N988 423 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 B3GNT7Q8NFL0 401 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 OR2T35Q8NGX2 323 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 NEIL3Q8TAT5 605 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 HMGB4Q8WW32 186 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ASB15Q8WXK1 588 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 HSPA12BQ96MM6 686 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 OR5M11Q96RB7 305 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 TRMT61BQ9BVS5 477 aaKnown RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ALOXE3Q9BYJ1 711 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 GPR62Q9BZJ7 368 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 RSPH9Q9H1X1 276 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 COMMD9Q9P000 198 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 CDH7Q9ULB5 785 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 DERAQ9Y315 318 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 PCDHB1Q9Y5F3 818 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 PLXND1Q9Y4D7 1925 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 AKR7A2O43488 359 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 GJB5O95377 273 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 MATN4O95460 622 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 SDHBP21912 280 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 PPIBP23284 216 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 COL8A1P27658 744 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 APEX1P27695 318 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 PTGER1P34995 402 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ARHGDIBP52566 201 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 CRYBB1P53674 252 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 GMFBP60983 142 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ADARB1P78563 741 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 TUSC3Q13454 348 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 CARD16Q5EG05 197 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 FAM205BPQ63HN1 556 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 KANK2Q63ZY3 851 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 SUSD1Q6UWL2 747 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 TMEM207Q6UWW9 146 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 UNQ6494/PRO21346Q6UXR6 183 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 CERS6Q6ZMG9 384 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 BEND7Q8N7W2 519 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF610Q8N9Z0 462 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 OR52L1Q8NGH7 329 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 OR2T11Q8NH01 316 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 DOK4Q8TEW6 326 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 IMP4Q96G21 291 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 CASD1Q96PB1 797 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF382Q96SR6 550 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 SLC52A3Q9NQ40 469 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 NUDT15Q9NV35 164 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF69Q9UC07 566 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 SLC25A13Q9UJS0 675 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 PADI3Q9ULW8 664 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 RUVBL1Q9Y265 456 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 DLGAP4Q9Y2H0 992 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 NEUROG3Q9Y4Z2 214 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 CFAP20Q9Y6A4 193 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 TRBV23OR9-2A0A075B6M9 112 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 ASPDHA6ND91 283 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 TRIM3O75382 744 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 GATBO75879 557 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 HPRP00739 348 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 HLA-DQA2P01906 255 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 IFNA16P05015 189 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 MRPL3P09001 348 aaKnown RBP5.19□□□□□ -1.58
LIMA1-203ENST00000547825 STAT5AP42229 794 aa5.19□□□□□ -1.58
LIMA1-203ENST00000547825 OR3A3P47888 321 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms