RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 SH3GL2Q99962 352 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 GPATCH1Q9BRR8 931 aaKnown RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 POLDIP3Q9BY77 421 aaKnown RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 MRPL1Q9BYD6 325 aaKnown RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 NXF5Q9H1B4 397 aaKnown RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 EPB41L4BQ9H329 900 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 UBQLN3Q9H347 655 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 LIN7BQ9HAP6 207 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 SRA1Q9HD15 236 aaKnown RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 FARSBQ9NSD9 589 aaKnown RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 CCM2LQ9NUG4 571 aaPredicted RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 CRIM1Q9NZV1 1036 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 B4GALT7Q9UBV7 327 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 ADAM29Q9UKF5 820 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 PCTPQ9UKL6 214 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 CES1P1Q9UKY3 287 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 DTX4Q9Y2E6 619 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 PCDHA9Q9Y5H5 950 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 IKBKGQ9Y6K9 419 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 PRRC2AP48634 2157 aaKnown RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 NINQ8N4C6 2090 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 TMEM238LA0A1B0GVL6 79 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 STX16-NPEPL1H3BU86 382 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 STX16O14662 325 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 GNB5O14775 395 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 CTIFO43310 598 aaKnown RBP7.73□□□□□ -1.17
USP28-215ENST00000545608 DIAPH2O60879 1101 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 ABCB1P08183 1280 aaPredicted RBP7.73□□□□□ -1.17
USP28-215ENST00000545608 RBP1P09455 135 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 PORP16435 677 aaPredicted RBP7.73□□□□□ -1.17
USP28-215ENST00000545608 BMP7P18075 431 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 TSPAN8P19075 237 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 BMP5P22003 454 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 GPX3P22352 226 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 ABCD3P28288 659 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 TIMP3P35625 211 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 FEN1P39748 380 aaKnown RBP7.73□□□□□ -1.17
USP28-215ENST00000545608 MAGEA12P43365 314 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 MASP1P48740 699 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 AGFG1P52594 562 aaKnown RBP7.73□□□□□ -1.17
USP28-215ENST00000545608 ZNF136P52737 540 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 DUSP2Q05923 314 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 MAP4K2Q12851 820 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 PRICKLE4Q2TBC4 344 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 WIPI1Q5MNZ9 446 aaPredicted RBP7.73□□□□□ -1.17
USP28-215ENST00000545608 DCST1Q5T197 706 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 CCNYL2Q5T2Q4 361 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 TIGD3Q6B0B8 471 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 TTC19Q6DKK2 380 aaPredicted RBP7.73□□□□□ -1.17
USP28-215ENST00000545608 MILR1Q7Z6M3 343 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 RELL1Q8IUW5 271 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 OR7G1Q8NGA0 311 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 OR4F6Q8NGB9 312 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 SLC44A1Q8WWI5 657 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 RNASE6Q93091 150 aaKnown RBP7.73□□□□□ -1.17
USP28-215ENST00000545608 ISL2Q96A47 359 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 TM4SF18Q96CE8 201 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 WDYHV1Q96HA8 205 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 TMEM41AQ96HV5 264 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 NODALQ96S42 347 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 SECISBP2Q96T21 854 aaKnown RBP7.73□□□□□ -1.17
USP28-215ENST00000545608 UGT2B28Q9BY64 529 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 FUT8Q9BYC5 575 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 PRDM14Q9GZV8 571 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 CXXC4Q9H2H0 198 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 ACSS3Q9H6R3 686 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 RASSF1Q9NS23 344 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 AHSPQ9NZD4 102 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 XPR1Q9UBH6 696 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 CAMK2AQ9UQM7 478 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 C15orf41Q9Y2V0 281 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 MTORP42345 2549 aa7.73□□□□□ -1.17
USP28-215ENST00000545608 NCKAP5O14513 1909 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 AKAP6Q13023 2319 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 C1orf226A1L170 272 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 KIF2AO00139 706 aaPredicted RBP7.72□□□□□ -1.17
USP28-215ENST00000545608 DVL2O14641 736 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 ERAL1O75616 437 aaKnown RBP7.72□□□□□ -1.17
USP28-215ENST00000545608 PPM1BO75688 479 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 KRT38O76015 456 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 PDYNP01213 254 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 THBS1P07996 1170 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 INHBAP08476 426 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 RPS17P08708 135 aaKnown RBP7.72□□□□□ -1.17
USP28-215ENST00000545608 SBK3P0C264 359 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 CD99P14209 185 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 PTPN6P29350 595 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 PHBP35232 272 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 PTGDSP41222 190 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 TMED10P49755 219 aaKnown RBP7.72□□□□□ -1.17
USP28-215ENST00000545608 ASCL1P50553 236 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 MAPK12P53778 367 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 NAGLUP54802 743 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 CDH13P55290 713 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 NRG3P56975 720 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 RPP38P78345 283 aaKnown RBP7.72□□□□□ -1.17
USP28-215ENST00000545608 GALNT1Q10472 559 aaPredicted RBP7.72□□□□□ -1.17
USP28-215ENST00000545608 IFT88Q13099 833 aa7.72□□□□□ -1.17
USP28-215ENST00000545608 EXOSC7Q15024 291 aaKnown RBP7.72□□□□□ -1.17
USP28-215ENST00000545608 TOMM20Q15388 145 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms