RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 PLOD3O60568 738 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 SNNO75324 88 aaPredicted RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 SEMA7AO75326 666 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 KITP10721 976 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 G6PDP11413 515 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 PRPS2P11908 318 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 EFNA1P20827 205 aaPredicted RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 CNR1P21554 472 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 ABCD3P28288 659 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 GPC1P35052 558 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 PIGAP37287 484 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 PPICP45877 212 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 DNASE1L1P49184 302 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 TMED10P49755 219 aaKnown RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 MANFP55145 182 aaKnown RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 FBXW4P57775 412 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 PLGLB1Q02325 96 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 EMX2Q04743 252 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 SRSF1Q07955 248 aaKnown RBP eCLIP8.5□□□□□ -1.055e-12■■□□□ 12.5
SNHG1-215ENST00000540904 MAD2L1Q13257 205 aaPredicted RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 PDE7AQ13946 482 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 PTGR1Q14914 329 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 NTRK2Q16620 822 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 ZNF385BQ569K4 471 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 PRAMEF20Q5VT98 475 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 GK5Q6ZS86 529 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 ZNF551Q7Z340 670 aaPredicted RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 R3HCC1LQ7Z5L2 792 aaKnown RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 DND1Q8IYX4 353 aaKnown RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 FAM26EQ8N5C1 309 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 ZFP62Q8NB50 900 aaPredicted RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 POGLUT1Q8NBL1 392 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 C17orf47Q8NEP4 570 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 OR7A2PQ8NGA2 310 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 ZFP28Q8NHY6 868 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 RAB3IL1Q8TBN0 382 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 PAQR8Q8TEZ7 354 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 ELP4Q96EB1 424 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 ZBED6CLQ96FA7 236 aaPredicted RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 ZNF764Q96H86 408 aaPredicted RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 LCORQ96JN0 433 aaPredicted RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 GPR137Q96N19 417 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 SH3GL2Q99962 352 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 FAM173AQ9BQD7 235 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 VIPAS39Q9H9C1 493 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 SH2D2AQ9NP31 389 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 DDX18Q9NVP1 670 aaKnown RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 TAS2R9Q9NYW1 312 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 PLA2G2EQ9NZK7 142 aa8.5□□□□□ -1.05
SNHG1-215ENST00000540904 NOP53Q9NZM5 478 aaKnown RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 EIF3LQ9Y262 564 aaKnown RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 CHCHD2Q9Y6H1 151 aaPredicted RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 SPENQ96T58 3664 aaKnown RBP8.5□□□□□ -1.05
SNHG1-215ENST00000540904 NBASA2RRP1 2371 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 HELZ2Q9BYK8 2649 aaKnown RBP8.49□□□□□ -1.05
SNHG1-215ENST00000540904 A0A087WV62 115 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 FRG2CA6NGY1 282 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 FAM166BA8MTA8 275 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 HMGB1P1B2RPK0 211 aaPredicted RBP8.49□□□□□ -1.05
SNHG1-215ENST00000540904 ACOT7O00154 380 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 UPK1AO00322 258 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 PLOD2O00469 737 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 TP53I11O14683 189 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 SCAMP2O15127 329 aaKnown RBP8.49□□□□□ -1.05
SNHG1-215ENST00000540904 ACOX3O15254 700 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 ASNA1O43681 348 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 HS6ST1O60243 411 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 CDC40O60508 579 aaKnown RBP eCLIP8.49□□□□□ -1.051e-14■■■□□ 16.4
SNHG1-215ENST00000540904 TBX19O60806 448 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 COQ9O75208 318 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 ERN1O75460 977 aaKnown RBP8.49□□□□□ -1.05
SNHG1-215ENST00000540904 SASH3O75995 380 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 PDE9AO76083 593 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 SLITRK5O94991 958 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 AGFG2O95081 481 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 LAMP1P11279 417 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 DDX5P17844 614 aaKnown RBP8.49□□□□□ -1.05
SNHG1-215ENST00000540904 PRPS1L1P21108 318 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 DRD5P21918 477 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 RPL3P39023 403 aaKnown RBP8.49□□□□□ -1.05
SNHG1-215ENST00000540904 CORO7P57737 925 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 DCAF7P61962 342 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 PPIAP62937 165 aaKnown RBP8.49□□□□□ -1.05
SNHG1-215ENST00000540904 KCNJ2P63252 427 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 PLCXD2Q0VAA5 305 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 ZNF155Q12901 538 aaPredicted RBP8.49□□□□□ -1.05
SNHG1-215ENST00000540904 UBAP2LQ14157 1087 aaKnown RBP8.49□□□□□ -1.05
SNHG1-215ENST00000540904 RPS6KA2Q15349 733 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 KRTCAP3Q53RY4 240 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 CPTPQ5TA50 214 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 SZRD1Q7Z422 152 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 SIAH3Q8IW03 269 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 SLC44A2Q8IWA5 706 aaPredicted RBP8.49□□□□□ -1.05
SNHG1-215ENST00000540904 OR2L13Q8N349 312 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 KRTCAP2Q8N6L1 136 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 NUDT8Q8WV74 236 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 ZNF75CPQ92670 426 aaPredicted RBP8.49□□□□□ -1.05
SNHG1-215ENST00000540904 DIO2Q92813 273 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 TMBIM1Q969X1 311 aa8.49□□□□□ -1.05
SNHG1-215ENST00000540904 MTERF3Q96E29 417 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms